Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq144 149 1e-30 seq443 136 9e-27 seq743 100 7e-16 >seq144 Length=153386 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 || |||||||| ||| ||| || || | ||||| |||| | |||||| || || || Sbjct 49654 ACCAGGTGGAGTGTGCTTTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCGTCATCA 49713 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 |||||||||||||| |||||||| || || ||||| || |||||||| |||||||| ||| Sbjct 49714 AGCTGCTTCCCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGG 49773 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 |||||| ||||||| |||||| ||||| || | ||||| || | || || || || Sbjct 49774 ATCTTTGCCTTCACATTTTCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATGGTTTTA 49833 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| | || || | || | |||||| || Sbjct 49834 CCCGTTAGCGTCTTCACAAAAATTTGCATCTT 49865 >seq443 Length=45324 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| || || || ||||| || | || ||||| | || || |||||||| Sbjct 285 CAGCACCAAGTGAAGGGTTGACTCTTTCTGAATGTTATAATCAGACAGCGTCCTCCCATC 226 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || || ||||| || || || || || ||||| || |||||||| Sbjct 225 TTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGATCAGGAGGAATTCCCTCCTTGTC 166 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || |||||| |||||| ||||| |||||||| | || || || | |||||||| Sbjct 165 CTGAATCTTTGCCTTCACGTTCTCGATAGTGTCTGATGGCTCAACATCAAGAGTGATCGT 106 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| ||| || | || | |||||| Sbjct 105 CTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 73 >seq743 Length=20979 Score = 100 bits (110), Expect = 7e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 225557 CATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCT 225616 ||||||| |||||||| || || || ||||| || || || || || ||||| || |||| Sbjct 1 CATCTTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGATCAGGAGGAATTCCCTCCT 60 Query 225617 TGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 ||||||| |||||| ||| || ||||| |||||||| | || || |||| |||| Sbjct 61 TGTCTTGAATCTTTGCCTTTACGTTCTCGATAGTGTCTGATGGCTCAACATCTAGAGTGA 120 Query 225677 TCGTCTTGCCCGT 225689 | ||||| ||||| Sbjct 121 TGGTCTTCCCCGT 133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192479021170010