Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq200 141 1e-28 >seq200 Length=58787 Score = 141 bits (156), Expect = 1e-28 Identities = 281/413 (68%), Gaps = 6/413 (1%) Strand=Plus/Minus Query 76028 TCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGA 76087 ||||| || || ||||||| |||| || || || ||||||||| | ||| ||| Sbjct 57065 TCGAAGATATTTTTATTAATATCTCTAGCAGCAGGAGAATCAAAAGGCAGACGTAGAAGT 57006 Query 76088 ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAA 76147 | |||||||||||| |||||||| || || | ||| ||||| |||||||| |||| Sbjct 57005 AGAAATGCATCTGCAAGTCCCTGTACACCTAAACCGATAGGCCTATGTCTGAGATTGCTT 56946 Query 76148 ATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACA 76207 | ||||| || ||||| || ||||| |||| ||||| ||||| |||||||| Sbjct 56945 CGTCTTGCTTCGGGTATAGGATAGTAATTTCTATCGATAATATTATTAAGATTTCTAGTC 56886 Query 76208 ACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAAT-TTTCCATCT----ATC-ACA 76261 | || |||| || || ||||| || | | |||||| | | | ||| ||| ||| Sbjct 56885 ATAACCTTAATAACATCTTTTAGCTTATCATAGTCAAATGTCTTCTTCTCTGCATCTACA 56826 Query 76262 AACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATAT 76321 || |||| || ||| || ||||| || || ||||| || | || | | |||| Sbjct 56825 AAACGTGGGAGAGATACAGACGCAAGATTGCATACAGCTACTTCTTCAGGGCTTGTATAT 56766 Query 76322 TGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTC 76381 || | | || ||| ||||| || | | |||||| |||| || || |||||| Sbjct 56765 TGAACAACTTCACAGCAAAGATTGCTTGATCGTAGAGTTCCTAGATGCTGATGATTGCTC 56706 Query 76382 TTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTG 76434 ||| | || |||| || ||||| | | | |||| || || || || ||||| Sbjct 56705 TTTCTATTGCATGCATCTTTATACAACATATACGGTGTCCCGGTCTCTATCTG 56653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712903966612800