Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq144 129 4e-25 seq443 122 6e-23 seq743 95.1 9e-15 >seq144 Length=153386 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||||| ||||| || |||||||| |||| ||| | |||| || Sbjct 49654 ACCAGGTGGAGTGTGCTTTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCGTCATCA 49713 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||||||||| |||||||| | |||||||| || | ||| | ||| ||||| ||| Sbjct 49714 AGCTGCTTCCCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGG 49773 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| || | || ||||| | | ||||| || | ||||| || || Sbjct 49774 ATCTTTGCCTTCACATTTTCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATGGTTTTA 49833 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || |||||||| || |||||||| Sbjct 49834 CCCGTTAGCGTCTTCACAAAAATTTGCAT 49862 >seq443 Length=45324 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||||| | || ||||| |||||| || ||| || || ||||| ||||| | Sbjct 299 CCACCTCTCAAGCGCAGCACCAAGTGAAGGGTTGACTCTTTCTGAATGTTATAATCAGAC 240 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || | | | || ||||||||||| |||||||| || | |||||||||||| | ||| Sbjct 239 AGCGTCCTCCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGATCAGGAGGA 180 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| ||||| ||||| |||| | || ||||| | | || || Sbjct 179 ATTCCCTCCTTGTCCTGAATCTTTGCCTTCAC-GTTCTCGATAGTGTCTGATGGCTCAAC 121 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || | || |||||||| || || || |||||||| |||||||||||| Sbjct 120 ATCAAGAGTGATCGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCATG 72 >seq743 Length=20979 Score = 95.1 bits (104), Expect = 9e-15 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || ||||||||||| |||||||| || | |||||||||||| | ||| | || ||||| Sbjct 3 TCTTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGATCAGGAGGAATTCCCTCCTTG 62 Query 44243 TCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAAT 44301 || ||||| ||| | | |||| | || ||||| | | || || || | || || Sbjct 63 TCTTGAATCTT-TGCCTTTACGTTCTCGATAGTGTCTGATGGCTCAACATCTAGAGTGAT 121 Query 44302 CGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| |||||||||||||| || ||||| ||||| Sbjct 122 GGTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCAT 157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359975417087055