Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2845 93.3 9e-14 seq269 87.8 4e-12 >seq2845 Length=31711 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 |||||| | ||||||||||||||||||||||| ||||||| |||||||||| ||||||| Sbjct 17814 CTTGCCGATTTAGCTCAGTCGGTAGAGCGCCAGCCTTTTAAGCTGGTGGTCGCGGGTTCG 17873 Query 165767 AGCCCC 165772 |||||| Sbjct 17874 AGCCCC 17879 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||| | ||||||||||||||||||||||| ||||||| |||||||||| |||||||| Sbjct 16262 TTGCCGATTTAGCTCAGTCGGTAGAGCGCCAGCCTTTTAAGCTGGTGGTCGCGGGTTCGA 16321 Query 165768 GCCCC 165772 ||||| Sbjct 16322 GCCCC 16326 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| Sbjct 16101 TAGCTCAGTCGGTAGAGCGCCAGCCTTTTAAGCTGGTGGTCGCGGGTTCGAGCCCC 16046 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| Sbjct 17468 TAGCTCAGTCGGTAGAGCGCCAGCCTTTTAAGCTGGTGGTCGCGGGTTCGAGCCCC 17523 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| Sbjct 18341 TAGCTCAGTCGGTAGAGCGCCAGCCTTTTAAGCTGGTGGTCGCGGGTTCGAGCCCC 18396 >seq269 Length=74137 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| Sbjct 25896 TAGCTCAGTCGGTAGAGCGCCAGCCTTTTAAGCTGGTGGTCGCGGGTTCGAGCCCC 25951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057707779852250