Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2336 107 2e-18 >seq2336 Length=37921 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 || |||||| || || || || || ||||||||||| |||||||| | || || | ||| Sbjct 37632 AACAATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACTTTAGATGTTG-AGC 37690 Query 40746 CA-CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || | || | | ||| | |||| ||| |||| ||||| || ||||| ||| | | Sbjct 37691 CATCAGATACAATCGAAAATGTGAAGGCAAAGATTCAAGACAAGGAAGGCATTCCCCCTG 37750 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| || ||||| | ||| ||||| |||||||| |||| | || || || | Sbjct 37751 ATCAGCAGCGTCTCATTTTCGCAGGCAAGCAGCTGGAAGACGGAAGGACGCTGTCTGATT 37810 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||| || ||||| ||| | || || || | || ||||| |||| || ||| Sbjct 37811 ACAATATTCAGAAAGAGTCTACCCTTCACTTGGTTCTGCGCCTGAGAGGTGGC 37863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515163974942000