Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq2336 82.4 6e-11 >seq2336 Length=37921 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | |||||||| || |||||||||||||| | || || | |||| ||| Sbjct 37844 ACCAAGTGAAGGGTAGACTCTTTCTGAATATTGTAATCAGACAGCGTCCTTCCGTCTTCC 37785 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || || |||| || | ||||||||| ||| | ||| || ||||| | Sbjct 37784 AGCTGCTTGCCTGCGAAAATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCTTGA 37725 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | ||| ||||| ||||| || | || ||||| || Sbjct 37724 ATCTTTGCCTTCACATTTTCGATTGTATCTGATGGCTCAACATCTAAAGTGATGGTCTTG 37665 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | || |||||||| || |||||| Sbjct 37664 CCCGTGAGGGTCTTGACAAAGATCTGCATT 37635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414529473903550