Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1396 87.8 1e-12 >seq1396 Length=53008 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTC 43971 ||||| || || ||||| ||||||||||| || || ||| | | | || |||| || Sbjct 39483 ACCAAGTGCAGGGTGCTTTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCTGC-CATCATC 39541 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | || ||||| ||||| || | || |||||||| | || | ||||||||||| Sbjct 39542 AAGCTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCTGGTGGAATGCCTTCTTTATCCTG 39601 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||||| || || | | | ||| || | ||||||||||| | ||||| ||||| Sbjct 39602 GATTTTGGCCTTTACATTTTCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATAGTTTT 39661 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | ||||||||||| || ||||| Sbjct 39662 CCCCGTCAGCGTCTTCACAAAAATCTGCAT 39691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354740522969100