Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2336 152 1e-31 seq1396 149 1e-30 seq273 100 7e-16 >seq2336 Length=37921 Score = 152 bits (168), Expect = 1e-31 Identities = 179/241 (74%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || | || | ||||| |||||||||||||| || ||| Sbjct 37865 ATGCCACCTCTCAGGCGCAGAACCAAGTGAAGGGTAGACTCTTTCTGAATATTGTAATCA 37806 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || || |||||||| || || || || || ||||| || | ||| |||||||| Sbjct 37805 GACAGCGTCCTTCCGTCTTCCAGCTGCTTGCCTGCGAAAATGAGACGCTGCTGATCAGGG 37746 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || ||||||||||| || |||||||| | ||||| || || Sbjct 37745 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTCACATTTTCGATTGTATCTGATGGCTCA 37686 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTACA 104569 || |||| || || ||||| || || || || || ||||| ||||||||| | || ||| Sbjct 37685 ACATCTAAAGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCATTGT-TGCACA 37627 Query 104570 G 104570 | Sbjct 37626 G 37626 >seq1396 Length=53008 Score = 149 bits (164), Expect = 1e-30 Identities = 150/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 104368 TTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAA 104427 |||||| ||||| || ||||| || |||||||| || || || || || ||||||||||| Sbjct 39500 TTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCAAGCTGCTTTCCAGCAAA 39559 Query 104428 AATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATT 104487 ||| || | ||| || || || || || |||||||||||||| || || || |||||||| Sbjct 39560 AATAAGACGCTGCTGGTCTGGTGGAATGCCTTCTTTATCCTGGATTTTGGCCTTTACATT 39619 Query 104488 TTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 ||| | || || ||| || || || || |||||||| || || || || || || || Sbjct 39620 TTCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATAGTTTTCCCCGTCAGCGTCTTCAC 39679 Query 104548 AAATATCTGCATTTT 104562 ||| |||||||| || Sbjct 39680 AAAAATCTGCATCTT 39694 >seq273 Length=14814 Score = 100 bits (110), Expect = 7e-16 Identities = 224/331 (68%), Gaps = 4/331 (1%) Strand=Plus/Plus Query 238518 GCACACGTAAATGATAGAAGAAAATATATTTACTCTTTAAAACAGCTCGAGAGAGCCGAA 238577 || ||| ||| |||| |||| |||||||||| || | | ||||| || ||| ||| Sbjct 5886 GCGCACCAAAAAGATAAAAGAGAATATATTTATTCACTGCAGCAGCTGGAAGCAGCAGAA 5945 Query 238578 ACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCAT 238637 || |||||| || ||||| | || ||| || || | ||| || ||||| Sbjct 5946 ACCCACGATTTGCTGTGGAACGCGGCGCAGCAGCAGCTGCAGCAGCAAGGGAAGATGCAC 6005 Query 238638 AGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAA 238697 | || || | ||||||||||| ||||||||| | ||||||| ||||| | | Sbjct 6006 GGGTTTCTAAGGATGTATTGGGCAAAAAAGATATTAGAATGGAGCCCTTCTCCTGATTTA 6065 Query 238698 GCTCTTAGATATAG-TATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAA 238756 ||| ||| | | || | ||||| | || ||||| || ||||| |||||||| || Sbjct 6066 GCT-TTAAAAAGAGCTCTTTATTTAAATGATAAGCTTTCTCTTGACGGCACGGATCCGAA 6124 Query 238757 CGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGAT-AGGGCATGGTCTGAGA 238815 || | ||| || ||||||||| || |||| | || ||| ||||| ||| || | Sbjct 6125 TGGCTTCGTCGGGTGTATGTGGAGCGTAGCTGGACTGCATGATCAGGGC-TGGAAAGAAA 6183 Query 238816 GACCTATATTTGGAAAAGTTAGATACATGAA 238846 | || || ||||| ||| || | | |||||| Sbjct 6184 GGCCAATTTTTGGCAAAATTCGCTTCATGAA 6214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151271899096100