Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2336 91.5 1e-13 seq1396 82.4 7e-11 >seq2336 Length=37921 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||||| || || || | ||| ||||| || ||||| |||||||| Sbjct 37863 GCCACCTCTCAGGCGCAGAACCAAGTGAAGGGTAGACTCTTTCTGAATATTGTAATCAGA 37804 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || | ||| || ||||||||||||||| | || | ||||||||| || || || Sbjct 37803 CAGCGTCCTTCCGTCTTCCAGCTGCTTGCCTGCGAAAATGAGACGCTGCTGATCAGGGGG 37744 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 || ||||| ||||| ||| | | || ||| | | || | ||||| | | ||| | Sbjct 37743 AATGCCTTCCTTGTC-TTGAATCTTTGCCTTCACATTTTCGATTGTATCTGATGGCTCAA 37685 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || || || || |||||||| Sbjct 37684 CATCTAAAGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 37636 >seq1396 Length=53008 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 131044 TCCTTTTGAATGTTGTAATCGCTCATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 || |||||||||||||| ||| | || | || | || || |||||||| || || | Sbjct 39501 TCTTTTTGAATGTTGTAGTCGGAGAGAGTTCTGCCA-TCATCAAGCTGCTTTCCAGCAAA 39559 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 || | |||||||||||| || || || |||||||| || |||||| ||| | | Sbjct 39560 AATAAGACGCTGCTGGTCTGGTGGAATGCCTTCTTTATCCTGGATTTTGGCCTTTACATT 39619 Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | ||| || | | ||| | || | ||||| ||||| || || || || || || Sbjct 39620 TTCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATAGTTTTCCCCGTCAGCGTCTTCAC 39679 Query 131223 GAAAATCTGCAT 131234 ||||||||||| Sbjct 39680 AAAAATCTGCAT 39691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471962206128000