Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2336 122 6e-23 seq3028 100 2e-16 seq1396 95.1 8e-15 seq4386 91.5 1e-13 seq1732 91.5 1e-13 >seq2336 Length=37921 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||| |||| ||||| ||||| || ||| || |||||||||||||||||| Sbjct 37862 CCACCTCTCAGGCGCAGAACCAAGTGAAGGGTAGACTCTTTCTGAATATTGTAATCAGAC 37803 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | |||| || | || || || || || || || || || ||||| | ||| Sbjct 37802 AGCGTCCTTCCGTCTTCCAGCTGCTTGCCTGCGAAAATGAGACGCTGCTGATCAGGGGGA 37743 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| ||||| ||| ||| ||||||||| | || |||||| ||||| Sbjct 37742 ATGCCTTCCTTGTCTTGAATCTTTGCCTTCACATTTTCGATTGTATCTGATGGCTCAACA 37683 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || || || ||||| | ||| || || || |||||||| Sbjct 37682 TCTAAAGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 37636 >seq3028 Length=25216 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956 ||||||||||| |||||||| ||| ||||||||||||||||| | |||||||| Sbjct 21157 AAGCCCGTTCCGCCGGCTGTGGGTTCACTAGATAGTAGATAGGGACAGTCGGAATCTCGT 21216 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| | ||||||| |||||||||||||||| ||| Sbjct 21217 TAATTCATTCATGCACGTCACTAATTAGATGGCGA 21251 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 23223 CTCTCTTTCCAAAGTCCTTTTCATCTTTCCTTCACAGTACTTGTTCGCTATCGGTCTCAC 23282 Query 20007 GGTAATATTTAGCCTTAT 20024 | | |||||||| |||| Sbjct 23283 GCCAGTATTTAGCTTTAT 23300 >seq1396 Length=53008 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| || || ||||| || |||||||| ||||| || || | | | | || || Sbjct 39483 ACCAAGTGCAGGGTGCTTTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCA 39542 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || ||||| ||||| || || || || || || | || | ||||||||| ||| Sbjct 39543 AGCTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCTGGTGGAATGCCTTCTTTATCCTGG 39602 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| ||| ||||| | || ||| || | || || || | ||||||||||| Sbjct 39603 ATTTTGGCCTTTACATTTTCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATAGTTTTC 39662 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||||||| || ||||| || |||||||| || Sbjct 39663 CCCGTCAGCGTCTTCACAAAAATCTGCATCTT 39694 >seq4386 Length=1472 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 1127 CTCTCTTTCCAAAGTCCTTTTCATCTTTCCTTCACAGTACTTGTTCGCTATCGGTCTCAC 1068 Query 20007 GGTAATATTTAGCCTTAT 20024 | | |||||||| |||| Sbjct 1067 GCCAGTATTTAGCTTTAT 1050 >seq1732 Length=2877 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 2096 CTCTCTTTCCAAAGTCCTTTTCATCTTTCCTTCACAGTACTTGTTCGCTATCGGTCTCAC 2037 Query 20007 GGTAATATTTAGCCTTAT 20024 | | |||||||| |||| Sbjct 2036 GCCAGTATTTAGCTTTAT 2019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334912195400825