Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1396 104 2e-17 seq2336 87.8 2e-12 >seq1396 Length=53008 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 114191 TTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTA 114250 |||||||||||||||||| ||| | ||| | ||| ||||| || || ||||| | Sbjct 39500 TTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCAAGCTGCTTTCCAGCAAA 39559 Query 114251 GATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTG 114310 || |||||||| ||||| || |||||||||||||| || || || |||| | Sbjct 39560 AATAAGACGCTGCTGGTCTGGTGGAATGCCTTCTTTATCCTGGATTTTGGCCTTTACATT 39619 Query 114311 TTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 ||| | ||||| | | || || || | ||| | ||||| || ||||| || || || Sbjct 39620 TTCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATAGTTTTCCCCGTCAGCGTCTTCAC 39679 Query 114371 AAAAATCTGCAT 114382 |||||||||||| Sbjct 39680 AAAAATCTGCAT 39691 >seq2336 Length=37921 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 || ||| || || | ||||| ||||| ||||| |||||||| || || | || Sbjct 37848 CAGAACCAAGTGAAGGGTAGACTCTTTCTGAATATTGTAATCAGACAGCGTCCTTCCGTC 37789 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| || || || || ||| | ||||||||||| || || || ||||||||||| ||||| Sbjct 37788 TTCCAGCTGCTTGCCTGCGAAAATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTC 37729 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 ||||||| || | | ||| | || || | | || || || | || | || Sbjct 37728 TTGAATCTTTGCCTTCACATTTTCGATTGTATCTGATGGCTCAACATCTAAAGTGATGGT 37669 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || || || ||||| |||||||| Sbjct 37668 CTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 37636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420090492672900