Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_009904.1 Length=142072 Score E Sequences producing significant alignments: (Bits) Value seq7544 84.2 2e-11 seq3069 84.2 2e-11 seq2799 84.2 2e-11 seq394 84.2 2e-11 seq45 84.2 2e-11 >seq7544 Length=226 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 136992 GGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCAACTGAGCTAAACG 137051 ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||| | | Sbjct 5 GGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAACCAACTGAGCTATAGG 64 Query 137052 TCCT 137055 ||| Sbjct 65 ACCT 68 Score = 84.2 bits (92), Expect = 2e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136992 GGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCAACTGAGCTA 137047 ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||| Sbjct 170 GGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAACCAACTGAGCTA 225 >seq3069 Length=24005 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 136992 GGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCAACTGAGCTAAACG 137051 ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||| | | Sbjct 23803 GGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAACCAACTGAGCTATAGG 23862 Query 137052 TCCT 137055 ||| Sbjct 23863 ACCT 23866 >seq2799 Length=33582 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 136992 GGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCAACTGAGCTAAACG 137051 ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||| | | Sbjct 22824 GGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAACCAACTGAGCTATAGG 22765 Query 137052 TCCT 137055 ||| Sbjct 22764 ACCT 22761 >seq394 Length=13118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 136992 GGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCAACTGAGCTAAACG 137051 ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||| | | Sbjct 10879 GGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAACCAACTGAGCTATAGG 10938 Query 137052 TCCT 137055 ||| Sbjct 10939 ACCT 10942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 136992 GGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCAACTGAGCTAAACG 137051 ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||| | | Sbjct 12206 GGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAACCAACTGAGCTATAGG 12147 Query 137052 TCCT 137055 ||| Sbjct 12146 ACCT 12143 >seq45 Length=18374 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 136992 GGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCAACTGAGCTAAACG 137051 ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||| | | Sbjct 12776 GGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAACCAACTGAGCTATAGG 12835 Query 137052 TCCT 137055 ||| Sbjct 12836 ACCT 12839 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 136992 GGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCAACTGAGCTAAACG 137051 ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||| | | Sbjct 12941 GGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAACCAACTGAGCTATAGG 13000 Query 137052 TCCT 137055 ||| Sbjct 13001 ACCT 13004 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 136992 GGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCAACTGAGCTAAACG 137051 ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||| | | Sbjct 13106 GGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAACCAACTGAGCTATAGG 13165 Query 137052 TCCT 137055 ||| Sbjct 13166 ACCT 13169 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 136992 GGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCAACTGAGCTAAACG 137051 ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||| | | Sbjct 13271 GGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAACCAACTGAGCTATAGG 13330 Query 137052 TCCT 137055 ||| Sbjct 13331 ACCT 13334 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 136992 GGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCAACTGAGCTAAACG 137051 ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||| | | Sbjct 13436 GGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAACCAACTGAGCTATAGG 13495 Query 137052 TCCT 137055 ||| Sbjct 13496 ACCT 13499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 454453683024000