Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2336 116 4e-21 seq1396 109 5e-19 seq2981 82.4 8e-11 >seq2336 Length=37921 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || ||||| ||||| |||||||| | | || | ||||||| |||||| Sbjct 37838 TGAAGGGTAGACTCTTTCTGAATATTGTAATCAGACAGCGTCCTTCCGTCTTCCAGCTGC 37779 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||| || ||||||| |||||||| || || ||||| ||||| || ||||| || ||| Sbjct 37778 TTGCCTGCGAAAATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCTTGAATCTTT 37719 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | |||||| | || || |||| ||| | ||||||||| || Sbjct 37718 GCCTTCACATTTTCGATTGTATCTGATGGCTCAACATCTAAAGTGATGGTCTTGCCCGTG 37659 Query 64421 AAAGTTTTTACGAAAATTTGCATT 64444 | || || || || || |||||| Sbjct 37658 AGGGTCTTGACAAAGATCTGCATT 37635 >seq1396 Length=53008 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 64252 TTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATA 64311 |||||||||||||||||| || | || || | | || ||||||||||| || ||| | Sbjct 39500 TTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCAAGCTGCTTTCCAGCAAA 39559 Query 64312 AATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAAC 64371 ||| || ||||||||||| || ||||| |||||||| || || ||||| ||||||| Sbjct 39560 AATAAGACGCTGCTGGTCTGGTGGAATGCCTTCTTTATCCTGGATTTTGGCCTTTACATT 39619 Query 64372 CTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 || | || ||| | ||||| || | || | || || || |||| || || || Sbjct 39620 TTCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATAGTTTTCCCCGTCAGCGTCTTCAC 39679 Query 64432 GAAAATTTGCATTTT 64446 ||||| ||||| || Sbjct 39680 AAAAATCTGCATCTT 39694 >seq2981 Length=26860 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 154586 AGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCA 154645 |||||||||||| || || |||| ||| || | || | |||| | ||||| ||| Sbjct 7954 AGACGCCAAGTTACACACAGCAACTTCATCTGGGCTCGTAAATTGAATTATTTCACAGCA 8013 Query 154646 CAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTC 154705 || || || ||||||| | || || | | ||| || ||| ||||||||| || Sbjct 8014 TAAGTTGCTAGATCGAATTGGCCCAAGATGTCGCTGGTTACTTTTCTCGTTGCATGCATC 8073 Query 154706 TTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGG 154743 ||||||||| || |||||||| || ||||| | ||||| Sbjct 8074 TTTGTACAACATATACGGGGTCCCTGTTTCTATTTGGG 8111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499591244323000