Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1396 96.9 3e-15 seq2336 95.1 1e-14 >seq1396 Length=53008 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 126923 TCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAG 126982 ||||||||||| ||||| ||| | || | ||| || ||||| |||||||| | Sbjct 39501 TCTTTTTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCAAGCTGCTTTCCAGCAAAA 39560 Query 126983 ATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGT 127042 || | |||||||| || || || ||||| || || ||| |||||| ||| | | | Sbjct 39561 ATAAGACGCTGCTGGTCTGGTGGAATGCCTTCTTTATCCTGGATTTTGGCCTTTACATTT 39620 Query 127043 TCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102 |||| ||||| | | ||| || || | ||| | ||||| || ||||| || || ||| Sbjct 39621 TCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATAGTTTTCCCCGTCAGCGTCTTCACA 39680 Query 127103 AAAATCTGCAT 127113 ||||||||||| Sbjct 39681 AAAATCTGCAT 39691 >seq2336 Length=37921 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | ||||||||||| |||||||||||||| || ||| | Sbjct 37850 CGCAGAACCAAGTGAAGGGTAGACTCTTTCTGAATATTGTAATCAGACAGCGTCCTTCCG 37791 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| | || | ||||||||||| || || ||||| |||||| Sbjct 37790 TCTTCCAGCTGCTTGCCTGCGAAAATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTG 37731 Query 127019 TCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 | | ||| | | || ||| | | ||||| || || | ||| || || | || | Sbjct 37730 T-CTTGAATCTTTGCCTTCACATTTTCGATTGTATCTGATGGCTCAACATCTAAAGTGAT 37672 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || || || || ||||| |||||||| Sbjct 37671 GGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 37636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475449832258000