Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1396 89.7 6e-13 >seq1396 Length=53008 Score = 89.7 bits (98), Expect = 6e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| |||| || || || ||||| || ||||||||||| ||||| | | || || Sbjct 39483 ACCAAGTGCAGGGTGCTTTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCA 39542 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || || | ||||||||||| | || | || || || ||| | Sbjct 39543 AGCTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCTGGTGGAATGCCTTCTTTATCCTGG 39602 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || ||| | | | | ||||| | |||||||| | || || ||||| Sbjct 39603 ATTTTGGCCTTTACATTTTCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATAGTTTTC 39662 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||||||||||| || ||||| || ||||| || Sbjct 39663 CCCGTCAGCGTCTTCACAAAAATCTGCATCTT 39694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565177813509000