Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3201 349 1e-90 seq1396 104 9e-17 >seq3201 Length=21064 Score = 349 bits (386), Expect = 1e-90 Identities = 1085/1650 (66%), Gaps = 51/1650 (3%) Strand=Plus/Plus Query 450920 GGAATTGATCTTGGAACCACCTTTTCA--TGTGTAGGTGTTTACCAAAATGGAAATGTAG 450977 |||||||||||||| || || || || || || ||||||| | |||| || | Sbjct 16590 GGAATTGATCTTGGGACGAC--TTACAGCTGCGTGGGTGTTTGGAAGAATGACGGGGTGG 16647 Query 450978 AAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGATT 451037 |||| || |||||||| ||||| || || |||||||| | || ||||| || Sbjct 16648 AAATAATTGCAAATGATCAAGGGAATCGCACAACTCCTTCTTACGTGGCATTTACTGAAA 16707 Query 451038 CAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAAACAC 451095 ||||| || | | || | ||||| || |||| ||| ||| | |||| || Sbjct 16708 CAGAACGATTGGTGGGAGATGCTGCGAAGAATCA--GGTGGCGAGAAACCCAGAAAATAC 16765 Query 451096 AGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAGA 451155 || | |||||| ||| | ||||||| || | | |||||| ||||||| ||| Sbjct 16766 CGTTTTTGATGCAAAAAGGCTAATTGGGCGAAAATTCGATGATCCAGCTGTACAGGCAGA 16825 Query 451156 GA--AAAAATTCTTTTCTTA-TGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGT 451212 | ||| ||| ||| || | || | | |||||||||| || |||| Sbjct 16826 TATGAAACATTGGCCCTTTAGTGTTAAAGGTGGGCCAGGGGGAAAGCCCTTAATAGAAGT 16885 Query 451213 AAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTAC 451272 ||||||| |||| | || || || ||| || |||||||| |||||||| | | Sbjct 16886 AAATTATCAAGGGGCAAAAAAGACATTTCACCCGGAAGAAATAAGTGCTATGGTTTTGAT 16945 Query 451273 TAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTAC 451332 || ||||| |||| ||||||| || |||| ||| | || || || ||||| Sbjct 16946 GAAGATGAAGGAAATAGCAGAAGCATTCGTTGGGAGAGAAGTGAAAGAAGCTGTTATTAC 17005 Query 451333 TGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGC 451392 ||| || ||||||||||||||| | ||| | ||||| || |||||||| ||| ||||| Sbjct 17006 TGTGCCAGCTTATTTCAATGATTCCCAAAGACAAGCTACAAAAGATGCTGGAACAATTGC 17065 Query 451393 TGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452 ||| |||||||| | |||| || |||||||| || || || || | |||||||| || Sbjct 17066 TGGGTTAAATGTGTTGAGAATAATAAATGAACCAACTGCTGCAGCAATTGCATATGGGCT 17125 Query 451453 AGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAA 451511 || | | ||| || | |||| ||| | ||| | || || | || || || | Sbjct 17126 AG----ACAAGAAGGGGCAGGGGGAAATGAATGTATTAATTTTCGACATGGGGGGGGGCA 17181 Query 451512 CTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATG 451571 || |||| |||| | | ||||||||||||| | ||||||||||| ||||| | Sbjct 17182 CTTTTGATGTTTCTTTGTTGACAATTGAAGATGGCATCTTTGAAGTAAAAGCAACAGCAG 17241 Query 451572 GTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGGA---ATGGTTGAAAA 451628 | ||||| ||| |||| || |||||| | |||||| | | || || || || || Sbjct 17242 GAGATACCCATTTAGGGGGGGAAGATTTCGATAATAGACTAGTTGACTTTTGTGTGCAA- 17300 Query 451629 CTGATGTTCAACG-AAAACTAAAAGTAGATATTTC--TACTAACCAAAAAGCACTTAGAC 451685 || || | || |||| || |||| | || | | ||| | ||| | ||| Sbjct 17301 --GACTTTAAGCGAAAAAATAGGAGTAAAGATCCCAGCAGCAACAGTAGGGCATTAAGAA 17358 Query 451686 GTCTTAAAACATCAGCAGAAAAAGCTAAAATTACACTCAGTTCAACA-CAAACTA-CTAG 451743 | ||| ||| | |||| || |||| ||| | || || || || | | | | Sbjct 17359 GGCTTCGAACCCAATGTGAAAGGGCAAAAAGAACATTAAG--CAGCAGCACTCAAGCAAC 17416 Query 451744 TATAAACATTGATAGTTTAGTTGATGGAATGGATTATGCTACTACTCTTACCCGTGCTAA 451803 || | |||||| ||| |||| ||||| || ||| | | | ||| | || || | Sbjct 17417 AATTGAAATTGATTCATTATTTGAAGGAATAGACTATTCAGTTTCACTTTCTCGCGCGAG 17476 Query 451804 ATTTGAATCAATTTG-TTCCAGTATTTTTGCACGGGTAATGAAACCTGTTGATCAAGTAT 451862 ||| ||| | |||| | | ||||| | | || || ||||| | |||| Sbjct 17477 ATTCGAAGAACTTTGCATGGATTATTTCCGAAATTCCCTTG-TTCCCGTTGAAAAGGTAT 17535 Query 451863 TACATGATTCTAAAATTAGTAAAGATAAAATTGATGAAATTGTGCTTGTAGGAGGTTCTA 451922 || | ||| | |||| |||| | | ||||| |||| | || || ||||| | Sbjct 17536 TAAAAGATAGTGGAATTGATAAACGAAGTGTACATGAAGTTGTTTTAGTGGGGGGTTCAA 17595 Query 451923 CACGAATTCCTAAAATTCAAGATATGTTGTCTTC----TTATTTTGGAGGAAAACAACTA 451978 || ||||||| ||||||||| | | | ||| ||||| |||||| ||| | Sbjct 17596 CAAGAATTCCCAAAATTCAACAACT----TATTCAAGAATATTTCAACGGAAAAGAACCA 17651 Query 451979 TGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATT 452038 || | || |||| || |||||||||||||| ||||| || || || || ||||||||| Sbjct 17652 TGCAGAAGTATAAACCCCGATGAAGCTGTTGCTTATGGCGCAGCTGTACAGGCAGCTATT 17711 Query 452039 CTAACAGGTTCAGAT-GATGAAAAATT-AGGAGATATTCTGTTAGTAGATGTAACACCTC 452096 |||| ||| | || | | || || | || |||| || ||||||| | || | Sbjct 17712 CTAAAAGGAGTAAATAGCTCCCAAGTTCAAGATTTATTACTTT--TAGATGTTGCCCCAC 17769 Query 452097 TATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTT 452156 | ||| | ||| | ||||| || || || | ||||| || || || || || || Sbjct 17770 TTTCTTTGGGATTAGAAACGGCGGGGGGGGTAATGACAAAGTTGATCGAAAGAAATACAA 17829 Query 452157 CTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAA 452216 | ||||| ||||| |||| || | || ||||| || || ||||| Sbjct 17830 CAATTCCGACGAAAAAATCCCAAATTTTCACAACTTATGCCGATAATCAGCCGGGTGTTT 17889 Query 452217 CTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAAT 452276 ||||||||||||||||||||| | ||||||||| |||||||||| | | ||| || Sbjct 17890 TAATTCAAGTGTTTGAAGGAGAAAGAGCAATGACAAAAGATAATAATTTATTGGGA-AAG 17948 Query 452277 TTACTCTTTCA-AACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTAT 452335 || | || | ||||| || ||||||||| || ||||| ||| |||| | | Sbjct 17949 TTCCATTTAGATGGAATTCCCCCCGCCCCAAGGGGAGTGCCCCAAATAGAAGTTACTTTT 18008 Query 452336 GATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCA 452395 || ||||||||||||| ||| | ||||| | ||| ||||| | |||||| | Sbjct 18009 GACATTGATGCAAATGGCATTATGAATGTTACTGCCACAGAAAAGAATACGGGAAAA--A 18066 Query 452396 GAAA--AAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAA 452453 | || ||||||||||||||||||||||| | | || | ||| ||| || || | || Sbjct 18067 GCAACCAAATTACAATTACTAATGATAAAGGCAGATTGAGTCAAGGAGAAATAGACAGAA 18126 Query 452454 TGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGAA-CAAGTTAGAAAACATGTTGAA 452512 |||| | ||||||||||| | || | ||| |||||| ||| | || | |||||| Sbjct 18127 TGGTGGCAGAAGCAGAAAAGTATAAAGCTGAAGATGAAGCAAATAAG-TTGCGAGTTGAA 18185 Query 452513 GCTAAAAACAAACTAGAAGGATATTGTTAT 452542 ||||| || |||||| ||||| ||| Sbjct 18186 GCTAAGAATGGGCTAGAAAACTATTGCTAT 18215 >seq1396 Length=53008 Score = 104 bits (114), Expect = 9e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || ||||| || ||||||||||| |||||||| || | ||| Sbjct 39691 ATGCAGATTTTTGTGAAGACGCTGACGGGGAAAACTATTACCCTTGATGTGGAGCCTTCT 39632 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | || ||||| || ||||| ||||| ||||| || || || Sbjct 39631 GACACTATCGAAAATGTAAAGGCCAAAATCCAGGATAAAGAAGGCATTCCACCAGACCAG 39572 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | ||||| | || || || ||||| ||||| |||||| | | || || || Sbjct 39571 CAGCGTCTTATTTTTGCTGGAAAGCAGCTTGATGATGGCAGAACTCTCTCCGACTACAAC 39512 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTA 391259 ||| | || || || || ||||| ||| Sbjct 39511 ATTCAAAAAGAAAGCACCCTGCACTTGGTA 39482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975501333376100