Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3201 414 1e-110 seq2856 122 1e-22 >seq3201 Length=21064 Score = 414 bits (458), Expect = 1e-110 Identities = 1091/1645 (66%), Gaps = 38/1645 (2%) Strand=Plus/Minus Query 6517 ATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCG---TACTT--TTCA 6571 ||| || |||||||| || |||||||| || || || |||| || || |||| Sbjct 18215 ATAGCAATAGTTTTCTAGCCCATTCTTAGCTTCAAC-----TCGCAACTTATTTGCTTCA 18161 Query 6572 TCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAAT 6631 |||||| ||||||||||||| || ||| ||||| | || || ||| ||| ||| Sbjct 18160 TCTTCAGCTTTATACTTTTCTGCTTCTGCCACCATTCTGTCTATTTCTCCTTGACTCAAT 18101 Query 6632 CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCA 6691 || || |||||||| ||||| ||||| | | | ||| |||| ||| ||| ||| Sbjct 18100 CTGCCTTTATCATTAGTAATTGTAATTTGGTTGCTTTTTCCCGTATTCTTTTCTGTGGCA 18041 Query 6692 CTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCC 6751 | ||||||| ||| ||||||||||||| || || | || | ||||| || ||| Sbjct 18040 GTAACATTCATAATGCCATTTGCATCAATGTCAAAAGTAACTTCTATTTGGGGCACTCCC 17981 Query 6752 CTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCC 6811 || || |||| ||||| || ||||| || | || | |||| | ||||| | | | Sbjct 17980 CTTGGGGCGGGGGGAATTCCATCTAAATGGAACTTTCCCAATAAATTATTATCTTTTGTC 17921 Query 6812 TTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTT 6871 | | ||| |||||| | |||| |||| || | || |||||||| ||| Sbjct 17920 ATTGCTCTTTCTCCTTCAAACACTTGAATTAAAACACCCGGCTGATTATCGGCATAAGTT 17861 Query 6872 GAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATA 6931 | ||| ||||| ||| || | ||||| || |||||||| || | | ||||| Sbjct 17860 GTGAAAATTTGGGATTTTTTCGTCGGAATTGTTGTATTTCTTTCGATCAACTTTGTCATT 17801 Query 6932 ATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCT 6991 | || ||| ||||| | ||| | ||| || || | || || || ||||| | ||| Sbjct 17800 ACCCCCCCCGCCGTTTCTAATCCCAAAGAAAGTGGGGCAACATCTAAAAGTAATAAATCT 17741 Query 6992 TGAACAGATTCGTTCCCTTCAC-CCGTTAAGA-TGGCGGCTTGGACCGTCGCCCCGTATG 7049 ||||| | | | || || || || ||| | || || || || | || || || | Sbjct 17740 TGAACT--TGGGAGCTATTTACTCCTTTTAGAATAGCTGCCTGTACAGCTGCGCCATAAG 17683 Query 7050 CGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATA 7109 | || || ||||||||||| || || | ||||||| ||||| ||||| || | Sbjct 17682 CAACAGCTTCATCGGGGTTTATACTTCTGCATGGTTCTTTTCCGTTGAAATATTCTTGAA 17623 Query 7110 ACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACT- 7168 | |||||||||||| || |||| ||| || || || || ||||| | ||||| || Sbjct 17622 TAAGTTGTTGAATTTTGGGAATTCTTGTTGAACCCCCCACTAAAACAACTTCATGTACAC 17563 Query 7169 TTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGG 7228 |||| |||||| || ||| | | ||||| || || | | | || ||| Sbjct 17562 TTCG-TTTATCAATTCCACTATCTTTTAATACCTTTTCAACGGGAACAAGGGAATTTCGG 17504 Query 7229 AACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGA---TGTATAGAAATCA 7285 || | ||||| || ||||| || || | || || | || || || |||| || Sbjct 17503 AAATAATCCATGCAAAGTTCTTCGAATCTCGCGCGAGAAAGTGAAACTGAATAG---TCT 17447 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTG--TGCCGTCGAAGATAACGTTC 7343 | || || |||| |||||||||||||| |||| ||| ||| | | ||| |||| Sbjct 17446 ATTCCTTCAAATAATGAATCAATTTCAATTGTTGCTTGAGTGCTGCTGCT--TAATGTTC 17389 Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATAT 7403 ||||| | ||||| ||||| | | | | || | ||| | | || Sbjct 17388 TTTTTGCCCTTTCACATTGGGTTCGAAGCCTTCTTAATGCCCTACTGTTGCTGCTGGGAT 17329 Query 7404 CTTT---CTTATGTTTACGTTTAAACTCTT-CAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 |||| | ||| ||| || ||||| |||| || | || ||| || ||||| |||| Sbjct 17328 CTTTACTCCTATTTTTTCGCTTAAAGTCTTGCACACAAAAGTC-AACTAGTCTATTATCG 17270 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 |||||||| || || || || ||||| || || || ||||| ||||||||||| || || Sbjct 17269 AAATCTTCCCCCCCTAAATGGGTATCTCCTGCTGTTGCTTTTACTTCAAAGATGCCATCT 17210 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 ||||| | ||||| ||||||||||| || || || |||| ||| ||||| | ||| ||| Sbjct 17209 TCAATTGTCAACAAAGAAACATCAAAAGTGCCCCCCCCCATGTCGAAAATTAATACATTC 17150 Query 7580 GTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTA 7639 | || | | ||||| || || || || || || || || || ||||||||||| Sbjct 17149 ATTTCCCCCTGCCCCTTCTTGTCTAGCCCATATGCAATTGCTGCAGCAGTTGGTTCATTT 17090 Query 7640 ATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTG 7698 || || | || ||| || | |||||||| ||| | |||||||| || ||||||| ||| Sbjct 17089 ATTATTCTCAACACA-TTTAACCCAGCAATTGTTCCAGCATCTTTTGTAGCTTGTCTTTG 17031 Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATA 7758 ||||| || || || || || || || | || || || | |||| | || | | Sbjct 17030 GGAATCATTGAAATAAGCTGGCACAGTAATAACAGCTTCTTTCACTTCTCTCCCAACGAA 16971 Query 7759 CGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAA 7818 | ||| || || || ||||| || | | |||||| | || ||||| | | || Sbjct 16970 TGCTTCTGCTATTTCCTTCATCTTCATCAAAACCATAGCACTTATTTCTTCCG-GGTGAA 16912 Query 7819 CTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGA 7877 ||| || || | || | | ||| ||||| || | ||| || || | | || Sbjct 16911 ATGTCTTTTTTGCCCCTTGATAATTTACTTCTATTAAGGGCTTTCCCCCTGGCCCACCTT 16852 Query 7878 TAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTC 7937 |||| || | | ||||| ||||||||| | || || | | || || |||| | Sbjct 16851 TAACACTAAAGGGCCAATGTTTCATATCTGCCTGTACAGCTGGATCATCGAATTTTCGCC 16792 Query 7938 CGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCG 7997 | || || | |||||||||||||| || |||| ||||| | || || ||||||| Sbjct 16791 CAATTAGCCTTTTTGCATCAAAAACGGTATTTTCTGGGTTTCTCGCCACCTGATTCTTCG 16732 Query 7998 CCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTC 8057 | || || || | | ||||| |||| ||||| || ||||| || || || || | Sbjct 16731 CAGCATCTCCCACCAATCGTTC---TGTTTCAGTAAATGCCACGTAAGAAGGAGTTGTGC 16675 Query 8058 GATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACG 8117 |||||||||| || || ||||| ||||| || | ||| || | ||| || || ||||| Sbjct 16674 GATTCCCTTGATCATTTGCAATTATTTCCACCCCGTCATTCTTCCAAACACCCACGCAGC 16615 Query 8118 AATACGTTGTTCCTAAATCAATACC 8142 || || || || | |||||| || Sbjct 16614 TGTAAGTCGTCCCAAGATCAATTCC 16590 >seq2856 Length=31363 Score = 122 bits (134), Expect = 1e-22 Identities = 193/277 (70%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 7535 GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG 7594 || || || || ||||| || ||||| || | | ||| | | | | ||||| | |||| Sbjct 17255 GACACGTCGAAGGTACCGCCTCCCAGATCGTAGACGAGGATGGTTTTTTCGTCTTTTTTG 17314 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 | |||||||||| || || || || || || ||||| || ||||| |||| | | Sbjct 17315 T------CGAGACCGTAGGCAATGGCAGCAGCAGTGGGTTCGTTGATAATGCGAATAACG 17368 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || ||||||||||| | | |||||||||||||| |||| || | ||||| ||||| Sbjct 17369 TTGAGGCCAGCAATGGCACCTGCATCTTTCGTCGCCTGTCTCTGGGCGTCGTTGAAGTAA 17428 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 ||||| ||||| ||||| || | | | |||| | | || | || ||| || | || Sbjct 17429 GCCGGCACCGTGACGACTGCATTCTTCACTTCCCTCCCCAAGTAGTTTTCTGCAACTTCC 17488 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 |||||||| | ||||| | || | |||||||| Sbjct 17489 TTCATTTTCCCCAACACCATTGCGGAGACCTCTTCAG 17525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635064721703000