Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3201 271 6e-67 seq1396 109 4e-18 seq2336 93.3 3e-13 seq2856 91.5 1e-12 >seq3201 Length=21064 Score = 271 bits (300), Expect = 6e-67 Identities = 570/841 (68%), Gaps = 13/841 (2%) Strand=Plus/Plus Query 551757 GAAGATGGTCTCTTTTCTGTATTAGCTACTAGTGGAGATTCTCATCTTGGTGGCGAAGAT 551816 |||||||| ||||| ||| ||| || |||||| | ||| | || || |||||| Sbjct 17208 GAAGATGGCATCTTTGAAGTAAAAGCAACAGCAGGAGATACCCATTTAGGGGGGGAAGAT 17267 Query 551817 TTTGATAATAGACTGGTATCATGGTGTGTTGAAGATTTTAAACGAAAAAACAA-AGTT-- 551873 || ||||||||||| || | ||||| |||| ||||| |||||||| | ||| Sbjct 17268 TTCGATAATAGACTAGTTGACTTTTGTGTGCAAGACTTTAAGCGAAAAAATAGGAGTAAA 17327 Query 551874 GATCT-ATCTACATCTGCCAAAGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAA 551932 |||| | | || | | | || | | | || |||| || ||||| || || Sbjct 17328 GATCCCAGCAGCAACAGT-AGGGCATTAAGAAGGCTTCGAACCCAATGTGAAAGGGCAAA 17386 Query 551933 ACGAGCTCTTTCATCTG--GTACTCAAACCACTATTGAAGTAGATTCATTATTTGAGGGA 551990 | || | || | | | | |||||| | || |||||| | |||||||||||||| ||| Sbjct 17387 AAGAACA--TTAAGCAGCAGCACTCAAGCAACAATTGAAATTGATTCATTATTTGAAGGA 17444 Query 551991 ATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTT 552050 || || ||| | |||| | || | ||| ||||| |||| ||| || Sbjct 17445 ATAGACTATTCAGTTTCACTTTCTCGCGCGAGATTCGAAGAACTTTGCATGGATTATTTC 17504 Query 552051 AGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAA 552110 |||| | ||| || || ||| | || |||| |||| ||||||||| | Sbjct 17505 CGAAATTCCCTTGTTCCCGTTGAAAAGGTATTAAAAGATAGTGGAATTGATAAACGAAGT 17564 Query 552111 GTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTT- 552169 ||||||||| |||| | || || || || ||||||||||| ||||||| || | | Sbjct 17565 GTACATGAAGTTGTTTTAGTGGGGGGTTCAACAAGAATTCCCAAAATTCAACAACTTATT 17624 Query 552170 -AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTG 552228 ||| |||||||| || ||| || | |||| | || || ||||| ||||||| Sbjct 17625 CAAGAA--TATTTCAACGGAAAAGAACCATGCAGAAGTATAAACCCCGATGAAGCTGTTG 17682 Query 552229 CCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAA 552288 | ||||| || || | || ||||||||||| ||| || | || | ||| Sbjct 17683 CTTATGGCGCAGCTGTACAGGCAGCTATTCTAAAAGGAGTAAATAGCTCCCAAGTTCAAG 17742 Query 552289 ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTA 552348 || | ||||| |||||||| | || || ||| | || |||||||| | || || | | Sbjct 17743 ATTTATTACTTTTAGATGTTGCCCCACTTTCTTTGGGATTAGAAACGGCGGGGGGGGTAA 17802 Query 552349 TGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTA 552408 |||| || | ||||| |||||||| || ||||| |||||||| | | || | | Sbjct 17803 TGACAAAGTTGATCGAAAGAAATACAACAATTCCGACGAAAAAATCCCAAATTTTCACAA 17862 Query 552409 CGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCA 552468 | ||| | |||||||| | | |||| ||||||| | ||||||||||||||| | | | Sbjct 17863 CTTATGCCGATAATCAGCCGGGTGTTTTAATTCAAGTGTTTGAAGGAGAAAGAGCAATGA 17922 Query 552469 CTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTG 552528 | |||||||||||| | | || | || ||||||| || ||||| || || || | | Sbjct 17923 CAAAAGATAATAATTTATTGGGAAAGTTCCATTTAGATGGAATTCCCCCCGCCCCAAGGG 17982 Query 552529 GAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTG 552588 |||| || ||||| ||||||||||| || || ||||| ||||| ||| ||||||| |||| Sbjct 17983 GAGTGCCCCAAATAGAAGTTACTTTTGACATTGATGCAAATGGCATTATGAATGTTACTG 18042 Query 552589 C 552589 | Sbjct 18043 C 18043 Score = 237 bits (262), Expect = 1e-56 Identities = 382/546 (70%), Gaps = 11/546 (2%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || || || || || || || ||||||||| | |||| || ||| Sbjct 16590 GGAATTGATCTTGGGACGACTTACAGCTGCGTGGGTGTTTGGAAGAATGACGGGGTGGAA 16649 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||||| ||||||||||| || | || ||||| ||||| || | || || ||||| Sbjct 16650 ATAATTGCAAATGATCAAGGGAATCGCACAACTCCTTCTTACGTGGCATTTACTGAAACA 16709 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 |||| || || || ||||| || || |||| | | | || || ||||| || Sbjct 16710 GAACGATTGGTGGGAGATGCTGCGAAGAATCAGGTGGCGAGAAACCCAGAAAATACCGTT 16769 Query 550178 TTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATG 550237 |||||||| ||| | ||||||| ||| || ||||| | |||| |||||||||||| Sbjct 16770 TTTGATGCAAAAAGGCTAATTGGGCGAAAATTCGATGATCCAGCTGTACAGGCAGATATG 16829 Query 550238 AAGCATTGGCCTTTCCAAATTGTTAATGTTTCT------GGAAAACCTTATATTGAAGCT 550291 || |||||||| || | |||||| | | ||||| || | || |||| Sbjct 16830 AAACATTGGCCCTTT---AGTGTTAAAGGTGGGCCAGGGGGAAAGCCCTTAATAGAAGTA 16886 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCACCAG-AACAAATTTCATCTATGGTTTTAAT 550350 | | || |||| | ||| | ||||||| | || |||| |||||||||| || Sbjct 16887 AATTATCAAGGGGCAAA-AAAGACATTTCACCCGGAAGAAATAAGTGCTATGGTTTTGAT 16945 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 ||| ||||| ||| ||| || || ||||| |||||| | || || || || || Sbjct 16946 GAAGATGAAGGAAATAGCAGAAGCATTCGTTGGGAGAGAAGTGAAAGAAGCTGTTATTAC 17005 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 ||| ||||| ||||| ||||| || ||| | |||||||| |||||||||||| ||||| Sbjct 17006 TGTGCCAGCTTATTTCAATGATTCCCAAAGACAAGCTACAAAAGATGCTGGAACAATTGC 17065 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 ||| | ||||| | | || || |||||||| |||||||| ||| |||||||||| || Sbjct 17066 TGGGTTAAATGTGTTGAGAATAATAAATGAACCAACTGCTGCAGCAATTGCATATGGGCT 17125 Query 550531 TGATAA 550536 || || Sbjct 17126 AGACAA 17131 >seq1396 Length=53008 Score = 109 bits (120), Expect = 4e-18 Identities = 152/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| || ||||| |||||||| ||| ||||| || | |||||||| ||| |||| Sbjct 39485 CAAG-TGCAGGGTGCTTTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCAA 39543 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 | || ||||| ||||||||||| | ||||| || || ||||| ||||||||||| || | Sbjct 39544 GCTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCTGGTGGAATGCCTTCTTTATCCTGGA 39603 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTA 563445 |||| ||||| || || || |||| | | || || || |||| |||||| Sbjct 39604 TTTTGGCCTTTACATTTTCGATAGTGTCAG-AAGGCTCCACATCAAGGGTAATAGTTTTC 39662 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || || || || ||||| ||||| Sbjct 39663 CCCGTCAGCGTCTTCACAAAAATCTGCAT 39691 >seq2336 Length=37921 Score = 93.3 bits (102), Expect = 3e-13 Identities = 110/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| ||||||||| ||||| |||||||||||||| || || ||| ||||| | Sbjct 37842 CAAG-TGAAGGGTAGACTCTTTCTGAATATTGTAATCAGACAGCGTCCTTCCGTCTTCCA 37784 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 | || || || || ||||| || | ||||||||||| ||||| ||||| || ||||||| Sbjct 37783 GCTGCTTGCCTGCGAAAATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCTTGAA 37724 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATC 563414 | ||| || || || |||||||| Sbjct 37723 TCTTTGCCTTCACATTTTCGATTGTATC 37696 >seq2856 Length=31363 Score = 91.5 bits (100), Expect = 1e-12 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 550388 GAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCT 550447 ||||| | | ||||||| | || || || || || || || ||| | || | || || Sbjct 17460 GAAGTGAAGAATGCAGTCGTCACGGTGCCGGCTTACTTCAACGACGCCCAGAGACAGGCG 17401 Query 550448 ACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACT 550507 || |||||||| || |||||||| || || ||| |||| |||||||| ||||| ||| Sbjct 17400 ACGAAAGATGCAGGTGCCATTGCTGGCCTCAACGTTATTCGCATTATCAACGAACCCACT 17341 Query 550508 GCTGCTGCACTTGCATATGGACTTGATAAA 550537 |||||||| |||| || || || || ||| Sbjct 17340 GCTGCTGCCATTGCCTACGGTCTCGACAAA 17311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028842515326750