Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1396 152 4e-32 seq2336 138 9e-28 seq273 82.4 6e-11 >seq1396 Length=53008 Score = 152 bits (168), Expect = 4e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| ||||||||| || ||||| |||| || ||||||| |||| || Sbjct 39483 ACCAAGTGCAGGGTGCTTTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCA 39542 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| || | |||||| || || || ||||||||||||||||| || Sbjct 39543 AGCTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCTGGTGGAATGCCTTCTTTATCCTGG 39602 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| |||||| |||| | ||||||||| | ||||| ||||| || | ||||| Sbjct 39603 ATTTTGGCCTTTACATTTTCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATAGTTTTC 39662 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| |||||||| Sbjct 39663 CCCGTCAGCGTCTTCACAAAAATCTGCAT 39691 >seq2336 Length=37921 Score = 138 bits (152), Expect = 9e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | || | ||| || ||||||||||| ||||| || ||||||||||| | Sbjct 37862 CCACCTCTCAGGCGCAGAACCAAGTGAAGGGTAGACTCTTTCTGAATATTGTAATCAGAC 37803 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || || | || |||| ||||| ||||| || || | |||||| ||||| || ||| Sbjct 37802 AGCGTCCTTCCGTCTTCCAGCTGCTTGCCTGCGAAAATGAGACGCTGCTGATCAGGGGGA 37743 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || |||||||| ||| || ||| |||| | || || || | || || Sbjct 37742 ATGCCTTCCTTGTCTTGAATCTTTGCCTTCACATTTTCGATTGTATCTGATGGCTCAACA 37683 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || | ||||| || ||||| || | || || ||||| |||||||| ||| Sbjct 37682 TCTAAAGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCATTGTT 37632 >seq273 Length=14814 Score = 82.4 bits (90), Expect = 6e-11 Identities = 206/308 (67%), Gaps = 4/308 (1%) Strand=Plus/Minus Query 13645 ATCTATATTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGAT 13704 ||| | ||||||||| | | ||| || | | |||||| || ||||| ||| | || Sbjct 6248 ATCAACATTGAATTTCCTTCGACATCCAGCTAGGTTCATGAAGCGAATTTTGCCAAAAAT 6189 Query 13705 TGGTCGCTCCATCCAGGCACGATCGTG-AGTTCCGCATATTGACCACATGCAACCGGCAT 13763 ||| | || ||||| | |||| || ||| | || || |||||| || ||| | Sbjct 6188 TGGCCTTTCTTTCCAGCCCTGATCATGCAGTCCAGC-TACGCTCCACATACACCCGACGA 6130 Query 13764 AACCGTTGGGATCGCGT-CCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATT 13822 | || || ||||| ||| || || | | || || || ||||| | || | || Sbjct 6129 AGCCATTCGGATC-CGTGCCGTCAAGAGAAAGCTTATCATTTAAATAAAGAGCTCTTTTT 6071 Query 13823 AAAGCCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATA 13882 ||||| | ||| ||| |||||||||||| ||||| |||||||| || || | | Sbjct 6070 AAAGCTAAATCAGGAGAAGGGCTCCATTCTAATATCTTTTTTGCCCAATACATCCTTAGA 6011 Query 13883 TATCCGTGCATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACAATATGTCA 13942 | |||||||| || |||||| | ||||| ||| || |||||||||| | || Sbjct 6010 AACCCGTGCATCTTCCCTTGCTGCTGCAGCTGCTGCTGCGCCGCGTTCCACAGCAAATCG 5951 Query 13943 TGAGTTTC 13950 || ||||| Sbjct 5950 TGGGTTTC 5943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396236985811275