Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3201 297 1e-74 seq1396 118 7e-21 seq2336 104 2e-16 >seq3201 Length=21064 Score = 297 bits (328), Expect = 1e-74 Identities = 702/1043 (67%), Gaps = 23/1043 (2%) Strand=Plus/Plus Query 475309 GGGAACTCATGACGTAACTTTACTATCACTCGAAGATGGTCTTTTCTCTGTAAGAGCAAC 475368 ||| ||| ||| || |||| | || | |||||||| | || |||| |||||| Sbjct 17177 GGGCACTTTTGATGTTTCTTTGTTGACAATTGAAGATGGCATCTTTGAAGTAAAAGCAAC 17236 Query 475369 AGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGTATCATGGTGTGT 475428 ||| |||||| | ||| | || || |||||||| ||||||||||| || | ||||| Sbjct 17237 AGCAGGAGATACCCATTTAGGGGGGGAAGATTTCGATAATAGACTAGTTGACTTTTGTGT 17296 Query 475429 TGAAGATTTCAAGAGGAAAAATA-AAGTTGATCTTTCAACATCTGC--TAAAGCATTAAG 475485 |||| || ||| | ||||||| ||| | | || || | | || |||||||| Sbjct 17297 GCAAGACTTTAAGCGAAAAAATAGGAGTAAAGATCCCAGCAGCAACAGTAGGGCATTAAG 17356 Query 475486 ACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGC-TCTTTCTTCTGCTACTCAAACTA 475544 | | ||| |||| |||||| | || || || | | | | || |||||| | | Sbjct 17357 AAGGCTTCGAACCCAATGTGAAAGGGCAAAAAGAACATTAAGCAGCAGC-ACTCAAGCAA 17415 Query 475545 CTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTA-TTACAAGGGCT 475603 | ||||| ||||||| | ||||||||||| || ||| | | | | || | | || Sbjct 17416 CAATTGAAATTGATTCATTATTTGAAGGAATAGACTAT-TCAGTTTCACTTTCTCGCGCG 17474 Query 475604 AAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTT 475663 | ||| ||||| |||| ||| || |||| | ||| ||||||||| | || Sbjct 17475 AGATTCGAAGAACTTTGCATGGATTATTTCCGAAATTCCCTTGTTCCCGTTGAAAAGGTA 17534 Query 475664 CTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCA 475723 | | |||| | | |||| ||| | || |||||| ||||| | || || |||||| Sbjct 17535 TTAAAAGATAGTGGAATTGATAAACGAAGTGTACATGAAGTTGTTTTAGTGGGGGGTTCA 17594 Query 475724 ACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTTAATGGTAAAAAGTTAAAT 475783 ||||||||||| ||||| | || | || | |||||| || || ||||| || Sbjct 17595 ACAAGAATTCCCAAAATTCAACAACTTATTCAAGAATATTTCAACGG--AAAAGAACCAT 17652 Query 475784 G--AAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTT 475841 | |||| |||| || |||||||||||||| ||||| || ||||| || ||||||||| Sbjct 17653 GCAGAAGTATAAACCCCGATGAAGCTGTTGCTTATGGCGCAGCTGTACAGGCAGCTATTC 17712 Query 475842 TATCAG--GTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACT 475899 || || || ||| || | || | | || | ||||| | || || | ||||| Sbjct 17713 TAAAAGGAGTAAAT-AG-CTCCCAAGTTCAAGATTTATTACTTTTAGATGTTGCCCCACT 17770 Query 475900 TTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCC 475959 ||| || || | ||||| | || ||| | ||||| || | || || |||||||| | Sbjct 17771 TTCTTTGGGATTAGAAACGGCGGGGGGGGTAATGACAAAGTTGATCGAAAGAAATACAAC 17830 Query 475960 TATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAAC 476019 || || |||||||| || | || | |||||| | |||||||| | ||| Sbjct 17831 AATTCCGACGAAAAAATCCCAAATTTTCACAACTTATGCCGATAATCAGCCGGGTGTTTT 17890 Query 476020 CATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTT 476079 || ||| | |||||||| |||||| | | || ||||||||||| | | |||| || Sbjct 17891 AATTCAAGTGTTTGAAGGAGAAAGAGCAATGACAAAAGATAATAATTTATTGGGAAAGTT 17950 Query 476080 TAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGA 476139 || | || || ||||| || || || || ||||| || ||||| |||||||||||||| Sbjct 17951 CCATTTAGATGGAATTCCCCCCGCCCCAAGGGGAGTGCCCCAAATAGAAGTTACTTTTGA 18010 Query 476140 TATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAA 476199 |||||||||||||| ||| | ||||||||||| || || || || || || Sbjct 18011 CATTGATGCAAATGGCATTATGAATGTTACTGCCACAGAAAAGAATACGGGAAAAAGCAA 18070 Query 476200 AAATATAACTATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACGTATGGT 476259 | || || ||||| || || || ||||| | | ||| | |||| | | ||||| Sbjct 18071 CCAAATTACAATTACTAATGATAAAGGCAGATTGAGTCAAGGAGAAATAGACAGAATGGT 18130 Query 476260 TGATGAAGCCAAAGAGTTTGAA---GAAGCTGATAACAAGAGAAAAGCTGCTA-TTGATG 476315 | ||||| || ||| | || |||| ||| | ||| | ||| ||| | |||| | Sbjct 18131 GGCAGAAGCAGAAAAGTATAAAGCTGAAGATGA-AGCAA---ATAAGTTGCGAGTTGAAG 18186 Query 476316 CAAAGAATGAACTTGAAAATTAT 476338 | ||||||| || ||||| ||| Sbjct 18187 CTAAGAATGGGCTAGAAAACTAT 18209 Score = 248 bits (274), Expect = 6e-60 Identities = 386/548 (70%), Gaps = 9/548 (2%) Strand=Plus/Plus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 || |||||| | || || |||||||| || || | ||||||| | |||| || ||| Sbjct 16590 GGAATTGATCTTGGGACGACTTACAGCTGCGTGGGTGTTTGGAAGAATGACGGGGTGGAA 16649 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 |||||||| ||||| ||||| ||| | ||||| || || || || | ||||||||||| Sbjct 16650 ATAATTGCAAATGATCAAGGGAATCGCACAACTCCTTCTTACGTGGCATTTACTGAAACA 16709 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATT 474514 |||| | | ||||||||||| || |||| | || || || | ||||| || Sbjct 16710 GAACGATTGGTGGGAGATGCTGCGAAGAATCAGGTGGCGAGAAACCCAGAAAATACCGTT 16769 Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 |||||||| ||||| | ||||| || || || |||||| | |||| || | |||||| Sbjct 16770 TTTGATGCAAAAAGGCTAATTGGGCGAAAATTCGATGATCCAGCTGTACAGGCAGATATG 16829 Query 474575 CGTCATTGGCCTTTTAAGGTGATAAATGT-----TGGTGGTAAACCATATATAGAAGCAA 474629 |||||||| |||| ||| |||| || || || || || | ||||||| || Sbjct 16830 AAACATTGGCCCTTTA--GTGTTAAAGGTGGGCCAGGGGGAAAGCCCTTAATAGAAGTAA 16887 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCA-CCGGAACAAATTTCTTCAATGGTTTTAGCC 474688 | ||| | || ||| | ||||| |||||| |||| | | |||||||| Sbjct 16888 ATTATCAAGGGGCAA-AAAAGACATTTCACCCGGAAGAAATAAGTGCTATGGTTTTGATG 16946 Query 474689 AAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 || ||||| ||| || ||| |||| |||||| | || || || |||||| Sbjct 16947 AAGATGAAGGAAATAGCAGAAGCATTCGTTGGGAGAGAAGTGAAAGAAGCTGTTATTACT 17006 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || ||||| ||||| |||||||| ||| | ||||| || |||||||| |||| |||||| Sbjct 17007 GTGCCAGCTTATTTCAATGATTCCCAAAGACAAGCTACAAAAGATGCTGGAACAATTGCT 17066 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 || | ||||| || | || || ||||||||||| || || ||| |||| ||||| || Sbjct 17067 GGGTTAAATGTGTTGAGAATAATAAATGAACCAACTGCTGCAGCAATTGCATATGGGCTA 17126 Query 474869 GATAAGAA 474876 || ||||| Sbjct 17127 GACAAGAA 17134 Score = 102 bits (112), Expect = 5e-16 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 290825 AGACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCT 290884 || ||||||| | || || || |||||||||||||| ||||| || |||| | || Sbjct 17125 AGCCCATATGCAATTGCTGCAGCAGTTGGTTCATTTATTATTCTCAACACATTTAACCCA 17066 Query 290885 GCAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACT 290944 |||||| || | | |||| || || || | ||| | |||||| |||||||| || || Sbjct 17065 GCAATTGTTCCAGCATCTTTTGTAGCTTGTCTTTGGGAATCATTGAAATAAGCTGGCACA 17006 Query 290945 GTAATAACAGCTTTTTCCACTTTCTTTTTCAAATAAT-TTTCTGCCATTT 290993 ||||||||||||| || ||| |||| | ||| ||| |||||| |||| Sbjct 17005 GTAATAACAGCTTCTTTCAC-TTCTCTCCCAACGAATGCTTCTGCTATTT 16957 >seq1396 Length=53008 Score = 118 bits (130), Expect = 7e-21 Identities = 150/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||| || || || |||||||| || || || || | ||||||||| ||| |||| Sbjct 39485 CAAG-TGCAGGGTGCTTTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCAA 39543 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 | ||||||||||||||||||||||| || || || || ||||| ||||| || || || | Sbjct 39544 GCTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCTGGTGGAATGCCTTCTTTATCCTGGA 39603 Query 480685 TCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744 | || || ||| ||| ||||| |||| | ||||||||||||||||| | Sbjct 39604 TTTTGGCCTTTACATTTTCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATAGTTTTCC 39663 Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769 | || || ||||| || ||||| || Sbjct 39664 CCGTCAGCGTCTTCACAAAAATCTG 39688 >seq2336 Length=37921 Score = 104 bits (114), Expect = 2e-16 Identities = 149/206 (72%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||| ||||| ||| ||||| || ||| ||||||| || || || ||||| | Sbjct 37842 CAAG-TGAAGGGTAGACTCTTTCTGAATATTGTAATCAGACAGCGTCCTTCCGTCTTCCA 37784 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 | ||||| || || ||||| ||||| || |||||||| ||||| |||||||||||||||| Sbjct 37783 GCTGCTTGCCTGCGAAAATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCTTGAA 37724 Query 480685 TCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTA 480743 ||||| || ||| ||| || ||||| | || | || || | || || || || Sbjct 37723 TCTTTGCCTTCACATTTTCGATTGTATCTGATGGCTCAA-CATCTAAAGTGATGGTCTTG 37665 Query 480744 CCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| ||||| || || || || Sbjct 37664 CCCGTGAGGGTCTTGACAAAGATCTG 37639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267811376644100