Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq3201 376 3e-99 seq2336 176 6e-39 seq1396 165 1e-35 seq2856 104 3e-17 >seq3201 Length=21064 Score = 376 bits (416), Expect = 3e-99 Identities = 1075/1629 (66%), Gaps = 29/1629 (2%) Strand=Plus/Plus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAG 195364 || || ||| | || || |||||| || || ||||| ||| | ||||| | || || Sbjct 16590 GGAATTGATCTTGGGACGACTTACAGCTGCGTGGGTGTTTGGAAGAATGACGGGGTGGAA 16649 Query 195365 ATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAAT 195424 || || | ||||| ||||| || || |||||||| || ||||| || ||||| || | Sbjct 16650 ATAATTGCAAATGATCAAGGGAATCGCACAACTCCTTCTTACGTGGCATTTACTGAAACA 16709 Query 195425 GAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTC 195484 ||||| | || |||||||| || || |||||| || | ||||| ||||| || Sbjct 16710 GAACGATTGGTGGGAGATGCTGCGAAGAATCAGGTGGCGAGAAACCCAGAAAATACCGTT 16769 Query 195485 TTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATA 195544 ||||| || || | || ||||| || || || ||| || || | ||||| Sbjct 16770 TTTGATGCAAAAAGGCTAATTGGGCGAAAATTCGATGATCCAGCTGTACAGGCAGATATG 16829 Query 195545 AAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGAT---AAGCCTATGATTAATGTT 195601 || | ||| | | | ||| ||| |||| | | | ||||| | || | || Sbjct 16830 AAACATTGGCCCTTT--AGT-GTTAAAGGTGGGCCAGGGGGAAAGCCCTTAATAGAAGTA 16886 Query 195602 GAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATT 195661 | | ||| || | || || |||| || |||||||| ||||||| ||||| Sbjct 16887 AATTATCAAGGGGCAAAAAAGACATTTCACCCGGAAGAAATAAGTGCTATGGTTTTGATG 16946 Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 ||||||||||| | || ||| | ||| | || | | |||||||| || ||| | ||| Sbjct 16947 AAGATGAAGGAAATAGCAGAAGCATTCGTTGGGAGAGAAGTGAAAGAAGCTGTTATTACT 17006 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || ||||| |||| |||||| ||| |||| || ||||| || |||| | ||||| Sbjct 17007 GTGCCAGCTTATTTCAATGATTCCCAAAGACAAGCTACAAAAGATGCTGGAACAATTGCT 17066 Query 195782 GGTCTAAACTGTCTT-AGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840 || |||| ||| || ||||| || ||||||||||| || || |||||||| ||||| || Sbjct 17067 GGGTTAAA-TGTGTTGAGAATAATAAATGAACCAACTGCTGCAGCAATTGCATATGGGCT 17125 Query 195841 GGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 |||||||| | | | || | |||||||| || || || | || || || || || Sbjct 17126 AGACAAGAAGGGGCAGGGGGAAATGAATGTATTAATTTTCGACATGGGGGGGGGCACTTT 17185 Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960 |||||| || | | | ||||||| ||| || || |||||||| || || || || || Sbjct 17186 TGATGTTTCTTTGTTGACAATTGAAGATGGCATCTTTGAAGTAAAAGCAACAGCAGGAGA 17245 Query 195961 TACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTG-ATGAGT 196019 ||| ||| |||| || |||||||||||| | || | | | ||||| || | || | Sbjct 17246 TACCCATTTAGGGGGGGAAGATTTCGATAATAGACTAGT-TGACTTTTGTGTGCAAGACT 17304 Query 196020 TCCGTCGAAAGAATAAG---AAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTA 196076 | ||||| |||| | |||||| | || |||||| | | ||||| Sbjct 17305 TTAAGCGAAAAAATAGGAGTAAAGATCCCAGCAGCAACAGTAGGGCATTAAGAAGGCTTC 17364 Query 196077 GGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGA 196136 | || ||||||| | || ||| |||| | | ||||| ||| |||| | Sbjct 17365 GAACCCAATGTGAAAGGGCAAAAAGAACATTAAGCAGCAGCACTCAAGCAACAATTGAAA 17424 Query 196137 TTGATTCGTTGTTTGACGGAATTGAC--TTCTATACAACTATTACCCGTGCACGTTTTGA 196194 ||||||| || ||||| ||||| ||| ||| | || || | || || | || || Sbjct 17425 TTGATTCATTATTTGAAGGAATAGACTATTCAGTTTCAC--TTTCTCGCGCGAGATTCGA 17482 Query 196195 AGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGA 196254 ||| | | |||| || | || | | | || |||||| | ||| | || Sbjct 17483 AGAACTTTGCATGGATTATTTCCGAAATTCCCTTGTTCCCGTTGAAAAGGTATTAAAAGA 17542 Query 196255 CGCAAAGATGGATAAGTCTAAG-GTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTA 196313 || ||||| | ||| || ||||| |||| | ||||| || ||||| | | Sbjct 17543 TAGTGGAATTGATAA-ACGAAGTGTACATGAAGTTGTTTTAGTGGGGGGTTCAACAAGAA 17601 Query 196314 TTCCGAAGATTCAACAGATGCTTTCTAG-CTTCTTCAATAATAAAGATTTAAACAAAACG 196372 |||| || |||||||| | ||| || | ||||| ||||| | || || Sbjct 17602 TTCCCAAAATTCAACA-ACTTATTCAAGAATATTTCAACGGAAAAGAACCATGCAGAAGT 17660 Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432 || ||||| |||||||| ||||||||||| || || || ||||| |||||||| ||| Sbjct 17661 ATAAACCCCGATGAAGCTGTTGCTTATGGCGCAGCTGTACAGGCAGCTATTCTAAAAGGA 17720 Query 196433 GTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGT 196492 || | | | || |||||| | | || | |||||||| || | || |||| Sbjct 17721 GTAAATAGCTCCCAAGTTCAAGATTTATTACTTTTAGATGTTGCCCCACTTTCTTTGGGA 17780 Query 196493 CTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACT 196552 | ||||| ||||| || || ||||| || | || || || || ||||| |||||||| Sbjct 17781 TTAGAAACGGCGGGGGGGGTAATGACAAAGTTGATCGAAAGAAATACAACAATTCCGACG 17840 Query 196553 AAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTA 196612 || || ||| | || |||| ||| |||||||||| || |||||| |||||||| Sbjct 17841 AAAAAATCCCAAATTTTCACAACTTATGCCGATAATCAGCCGGGTGTTTTAATTCAAGTG 17900 Query 196613 TATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACG 196672 | |||||||||| | | |||| ||||| || || | |||| ||| |||| Sbjct 17901 TTTGAAGGAGAAAGAGCAATGACAAAAGATAATAATTTATTGGGAAAGTTCCATTTAGAT 17960 Query 196673 GGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCA 196732 || ||||| | || || || || || || || || | ||| || || || || ||| Sbjct 17961 GGAATTCCCCCCGCCCCAAGGGGAGTGCCCCAAATAGAAGTTACTTTTGACATTGATGCA 18020 Query 196733 AATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTG 196792 ||||| ||| | || || || || || ||| | | || ||| | | ||| Sbjct 18021 AATGGCATTATGAATGTTACTGCCACAGAAAAGAATACGGGAAAAAGCAACCAAATTACA 18080 Query 196793 ATTACCAATGACAAGGGGCGGCTT---TCTAAGGAGGAAATTGAACGTATGGTTCAAGAT 196849 ||||| ||||| || ||| | || || ||||| ||||| || | ||||| ||| Sbjct 18081 ATTACTAATGATAA-AGGCAGATTGAGTC-AAGGA-GAAATAGACAGAATGGTGGCAGAA 18137 Query 196850 GCGGAAAAGTACAGGGAAGAAGACGAGGTATATGAGAAAC-AGATGAAAGCTATAAATGA 196908 || |||||||| | | ||||| || | | || || | || || |||||| |||| Sbjct 18138 GCAGAAAAGTATAAAGCTGAAGATGAAGCAAATAAGTTGCGAGTTG-AAGCTAAGAATGG 18196 Query 196909 TCTAGAAAA 196917 |||||||| Sbjct 18197 GCTAGAAAA 18205 >seq2336 Length=37921 Score = 176 bits (194), Expect = 6e-39 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || ||||| || || || || ||||| | || |||||| | ||| Sbjct 37636 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACTTTAGATGTTGAGCCATCA 37695 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || |||||||| || | || || ||||||||||| |||||||||||||| || |||||| Sbjct 37696 GATACAATCGAAAATGTGAAGGCAAAGATTCAAGACAAGGAAGGCATTCCCCCTGATCAG 37755 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| || || || ||||| ||||| ||| | || || |||||||||| Sbjct 37756 CAGCGTCTCATTTTCGCAGGCAAGCAGCTGGAAGACGGAAGGACGCTGTCTGATTACAAT 37815 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| || |||||||| || ||| | ||||| Sbjct 37816 ATTCAGAAAGAGTCTACCCTTCACTTGGTTCT 37847 >seq1396 Length=53008 Score = 165 bits (182), Expect = 1e-35 Identities = 151/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || |||||||| || || || || |||||||| ||||| || || ||| | || Sbjct 39691 ATGCAGATTTTTGTGAAGACGCTGACGGGGAAAACTATTACCCTTGATGTGGAGCCTTCT 39632 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || ||||| || || ||||| |||||||||||||| || ||| Sbjct 39631 GACACTATCGAAAATGTAAAGGCCAAAATCCAGGATAAAGAAGGCATTCCACCAGACCAG 39572 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || |||||||||||||| || |||||||| ||||| | || ||| | || |||||| Sbjct 39571 CAGCGTCTTATTTTTGCTGGAAAGCAGCTTGATGATGGCAGAACTCTCTCCGACTACAAC 39512 Query 172042 GTTCAAAAGGA 172052 ||||||| || Sbjct 39511 ATTCAAAAAGA 39501 >seq2856 Length=31363 Score = 104 bits (114), Expect = 3e-17 Identities = 177/254 (70%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 196607 CAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGA 196665 || || || || || ||||| ||| || | ||| | ||||| | || || | ||||| Sbjct 16038 CAGGTCTACGAGGGTGAACGG-CCCATGACCAAGAACAACCACTTGCTGGGCAAATTCGA 15980 Query 196666 TTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATAT 196725 |||||||| || || |||| || || || || || ||||| |||| || || | Sbjct 15979 ATTGACGGGAATCCCCCCTGCGCCAAGGGGAGTACCCCAGATCGATGTAACTTTTGACGT 15920 Query 196726 AGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAA 196785 ||| ||| ||||| | || |||| || | ||| |||| |||| ||| || || Sbjct 15919 GGACAGAAACGGAATATTGAATGTCAGTGCGGTGGATAAGGGAACTGGAAAAAGCGAGAA 15860 Query 196786 GATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCA 196845 || |||||||| |||||||||||||| || || ||||||||||| ||| |||| Sbjct 15859 AATAACTATTACCAACGACAAGGGGCGGCTGACTCCAGATGAAATTGAACGGATGATTCA 15800 Query 196846 AGATGCGGAAAAGT 196859 || ||||| |||| Sbjct 15799 GGAGGCGGAGAAGT 15786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657791885374000