Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1396 120 5e-22 seq2792 84.2 4e-11 >seq1396 Length=53008 Score = 120 bits (132), Expect = 5e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 193170 TCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAA 193229 ||||| ||| || |||||||| | ||||| ||| || | || ||||| |||||| Sbjct 39501 TCTTTTTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCAAGCTGCTTTCCAGCAAAA 39560 Query 193230 ATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTT 193289 || | | ||| || || || || || ||||||||||| || ||||||| |||| |||| Sbjct 39561 ATAAGACGCTGCTGGTCTGGTGGAATGCCTTCTTTATCCTGGATTTTGGCCTTTACATTT 39620 Query 193290 AAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACA 193349 ||||| || |||| ||| || || || || |||||||| || || ||||| || ||| Sbjct 39621 TCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATAGTTTTCCCCGTCAGCGTCTTCACA 39680 Query 193350 AATATTTGCATTTT 193363 || || ||||| || Sbjct 39681 AAAATCTGCATCTT 39694 >seq2792 Length=33526 Score = 84.2 bits (92), Expect = 4e-11 Identities = 281/415 (68%), Gaps = 37/415 (9%) Strand=Plus/Minus Query 46795 tattatttgactatttttaataatatatgttatggtat-atatgtaatttacgatatttG 46853 ||||||| | ||| |||| | |||||| | | ||| |||| ||||| |||| | Sbjct 6016 TATTATTATA-TATATTTAGTTATATATATACTATTATTATATTTAATT----ATATATA 5962 Query 46854 GAAATT-TTA-ATATGTTTACTGATATGATATTTAATAATTGGATA-AACTGTATAAA-- 46908 | ||| ||| |||| |||| | |||| |||| | || ||| || || | |||| | Sbjct 5961 TATATTATTATATATATTTAGTTATAT-ATATATTATTATTATATTTAATTATATATATA 5903 Query 46909 -ATTAAGAGACATATGTATTATTTTATCTATAATAACTATTATATTTAATTGTGCATTAA 46967 |||| | | |||| || | | ||| ||| || | |||||||||||||| | || | Sbjct 5902 TATTATTATATATATTTAATTATATATATATTATTATTATTATATTTAATTATATATATA 5843 Query 46968 CAGTATTAGAATtatactcattcatatat---ttaaaacatatacatatatcaaatatag 47024 | ||||| | |||| | | | |||||| ||| | || || ||||| | ||||| Sbjct 5842 TATTATTATA--TATATTTAATTATATATATATTATTATATTTAATTATAT-ATATATAT 5786 Query 47025 cactatgtataataaataCTTCGttacttttaattaatatattta--taaatt-tattat 47081 | ||| ||| ||| || ||| | |||||| |||||||| || ||| |||||| Sbjct 5785 TATTAT-----ATATATATTTAATTATATATAATTATTATATTTAATTATATTATATTAT 5731 Query 47082 ta-atgtatgctatatacttaaatattagaattata-gtaaaaatatttataatactata 47139 || || ||| || || || |||||| |||||| ||| ||| ||||| || |||| Sbjct 5730 TATATATAT-TTAATTATATATATATTATTATTATATTTAATTATA-TTATATTATTATA 5673 Query 47140 tattattagcatcgcgttgtatatattattaactaatattaaaatatattcgtat 47194 ||| ||| || | |||||||||||| | |||||| | ||| | |||| Sbjct 5672 TATATTTA--AT---TATATATATATTATTATAT-ATATTACAGTATTTATGTAT 5624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899557968294000