Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3201 581 2e-160 seq2856 91.5 1e-12 >seq3201 Length=21064 Score = 581 bits (644), Expect = 2e-160 Identities = 1109/1626 (68%), Gaps = 18/1626 (1%) Strand=Plus/Minus Query 281260 ATAATTTTCTAATTCATTTTTAGAATCAACA-GCAGCTTTTTTCTTGTTATCTGCTTCTT 281318 ||| ||||||| |||| |||| ||||| ||| ||| ||| | | |||| | ||| Sbjct 18209 ATAGTTTTCTAGCCCATTCTTAGCTTCAACTCGCAACTTATTTGCT-TCATCTTCAGCTT 18151 Query 281319 CAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGAT 281378 | | | || |||||| | |||||| || |||| ||| | ||||| || || Sbjct 18150 TATACTTTTCTGCTTCTGCCACCATTCTGTCTATTTCTCCTTGACTCAATCTGCCTTTAT 18091 Query 281379 TATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAA 281438 ||||||||| ||||| | ||| ||| || || || | |||||| ||||| | Sbjct 18090 CATTAGTAATTGTAATTTGGTTGCTTTTTCCCGTATTCTTTTCTGTGGCAGTAACATTCA 18031 Query 281439 GAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAG 281498 ||| ||||| ||||| | ||||| || ||||| ||||| || || || || | || | Sbjct 18030 TAATGCCATTTGCATCAATGTCAAAAGTAACTTCTATTTGGGGCACTCCCCTTGGGGCGG 17971 Query 281499 GTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTT 281558 | || || || || |||| || |||||| |||||||||||| || | | || || Sbjct 17970 GGGGAATTCCATCTAAATGGAACTTTCCCAATAAATTATTATCTTTTGTCATTGCTCTTT 17911 Query 281559 CACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 281618 | || || || | ||| || ||| | | |||||||| | ||||||||| || | | Sbjct 17910 CTCCTTCAAACACTTGAATTAAAACACCCGGCTGATTATCGGCATAAGTTGTGAAAATTT 17851 Query 281619 TGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAG 281678 ||||||||| ||||||||||| ||||| || || | || ||||| | || || | Sbjct 17850 GGGATTTTTTCGTCGGAATTGTTGTATTTCTTTCGATCAACTTTGTCATTACCCCCCCCG 17791 Query 281679 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 281738 | |||||||| || | |||||| || | ||||| | || | | || ||||| || Sbjct 17790 CCGTTTCTAATCCCAAAGAAAGTGGGGCAACATCTAAAAGTAATAAATCTTGAACTTGGG 17731 Query 281739 CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 281798 | || || ||||||||||| || | ||| || ||||| ||||||||||||| Sbjct 17730 AGCTATTTACTCCTTTTAGAATAGCTGCCTGTACAGCTGCGCCATAAGCAACAGCTTCAT 17671 Query 281799 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTA 281858 | || || | | || | ||| ||| || |||||| | | | || ||||||| | Sbjct 17670 CGGGGTTTATACTTCTGCATGGTTCTTTTCCGTTGAAATATTCTTGAATAAGTTGTTGAA 17611 Query 281859 CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCA 281918 || ||||| | | ||| || || ||||| |||| |||||| || | |||||| | Sbjct 17610 TTTTGGGAATTCTTGTTGAACCCCCCACTAAAACAACTTCATGTACACTTCGTTTATCAA 17551 Query 281919 GTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAAC 281978 | ||| ||| || ||||||||||| |||| | || || | || | Sbjct 17550 TTCCACTATCTTTTAATACCTTTTCAACGGGAACAAGGGAATTTCGGAAATAATCCATGC 17491 Query 281979 AAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAG 282038 |||||||||||||| | || | || ||| | || ||| || |||||||| || || | Sbjct 17490 AAAGTTCTTCGAATCTCGCGCGAGAAAGTGAAACTGAATAGTCTATTCCTTCAAATAATG 17431 Query 282039 AATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT-AGTGCACGTTTAGCACGTTCACAT 282097 |||||| |||||| || | |||||| | | | | | || | ||| || | ||||||| Sbjct 17430 AATCAATTTCAATTGTTGCTTGAGT-GCTGCTGCTTAATGTTCTTTTTGCCCTTTCACAT 17372 Query 282098 GCTGTCCTTAGTCTTCGTAAGGC-----TTTTGCTGATTGATTCAAATCTGTTTTATATT 282152 || | || |||| ||| || | |||||| | | || || | || || Sbjct 17371 TGGGTTCGAAGCCTTCTTAATGCCCTACTGTTGCTGCTGGGATCTTTACTCCT--ATTTT 17314 Query 282153 TTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCA 282212 ||| ||| || |||| ||||| | || || | |||||| |||||||| || || | Sbjct 17313 TTCGCTTAAAGTCTTGCACACAAAAGTCAACTAGTCTATTATCGAAATCTTCCCCCCCTA 17254 Query 282213 ATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAG 282272 | | |||| ||||| || ||| |||||| || | |||||||||| | ||| | || Sbjct 17253 AATGGGTATCTCCTGCTGTTGCTTTTACTTCAAAGATGCCATCTTCAATTGTCAACAAAG 17194 Query 282273 TAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGT 282332 ||||||| || || || ||||| || ||||| | |||||||||||| | | Sbjct 17193 AAACATCAAAAGTGCCCCCCCCCATGTCGAAAATTAATACATTCATTTCCCCCTGCCCCT 17134 Query 282333 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392 | || || || ||||| |||| || ||||||||||||||||| || |||||||| |||| Sbjct 17133 TCTTGTCTAGCCCATATGCAATTGCTGCAGCAGTTGGTTCATTTATTATTCTCAACACAT 17074 Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452 | | ||||||||| |||| |||||||| || ||||||||||| ||||| || ||||| | Sbjct 17073 TTAACCCAGCAATTGTTCCAGCATCTTTTGTAGCTTGTCTTTGGGAATCATTGAAATAAG 17014 Query 282453 CAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTT 282512 | || ||||||||||| || ||| | |||||| | |||| | || |||| ||| | Sbjct 17013 CTGGCACAGTAATAACAGCTTCTTTCACTTCTCTCCCAACGAATGCTTCTGCTATTTCCT 16954 Query 282513 TCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTT 282572 |||| || | |||| ||| | |||| ||| || | || ||| | | || Sbjct 16953 TCATCTTCATCAAAACCATAGCACTTATTTCTTCCGGGTGAAATGTCTTTTTTGCCCCTT 16894 Query 282573 GATATGATACTTCAAAATATGGTTT-----ATTACCAACATTAATAACTTTAAATGGCCA 282627 |||| |||||| | | || || | || || || |||| |||| ||||| Sbjct 16893 GATAATTTACTTCTATTAAGGGCTTTCCCCCTGGCCCACCTT--TAACACTAAAGGGCCA 16836 Query 282628 ATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGC 282687 || ||||||||||| || ||| | | |||| || | || ||||||| | |||||| Sbjct 16835 ATGTTTCATATCTGCCTGTACAGCTGGATCATCGAATTTTCGCCCAATTAGCCTTTTTGC 16776 Query 282688 ATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAG 282747 |||||||| ||||| ||| || || | |||| || || |||||||| | || Sbjct 16775 ATCAAAAACGGTATTTTCTGGGTTTCTCGCCACCTGATTCTTCGCAGCATCTCCCACCAA 16716 Query 282748 ATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGC 282807 ||||||| || ||||||| || || || |||||||||||||| ||||||||||| || Sbjct 16715 TCGTTCTGTTTCAGTAAATGCCACGTAAGAAGGAGTTGTGCGATTCCCTTGATCATTTGC 16656 Query 282808 AATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATC 282867 ||| ||||| || |||| | ||| ||||| || || || |||| || || | ||| Sbjct 16655 AATTATTTCCACCCCGTCATTCTTCCAAACACCCACGCAGCTGTAAGTCGTCCCAAGATC 16596 Query 282868 AATACC 282873 ||| || Sbjct 16595 AATTCC 16590 Score = 104 bits (114), Expect = 2e-16 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178 || ||||||| ||||| |||||||||||||| |||||| | | |||| ||| || ||| Sbjct 17122 CCATATGCAATTGCTGCAGCAGTTGGTTCATTTATTATTCTCAACACATTTAACCCAGCA 17063 Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238 ||| | ||| ||| || |||||||| || | ||||| ||||| ||||| |||||| Sbjct 17062 ATTGTTCCAGCATCTTTTGTAGCTTGTCTTTGGGAATCATTGAAATAAGCTGGCACAGTA 17003 Query 86239 ATAACTGCTT 86248 ||||| |||| Sbjct 17002 ATAACAGCTT 16993 >seq2856 Length=31363 Score = 91.5 bits (100), Expect = 1e-12 Identities = 114/156 (73%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 282318 TTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 282377 ||| || ||||| |||| || ||||| || |||| ||||||||||| ||||| || | Sbjct 17298 TTTTTTCGTCTT---TTTTGTCGAGACCGTAGGCAATGGCAGCAGCAGTGGGTTCGTTGA 17354 Query 282378 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 282437 |||| | | ||| || || |||||||| ||||||||||| || || ||||| || | Sbjct 17355 TAATGCGAATAACGTTGAGGCCAGCAATGGCACCTGCATCTTTCGTCGCCTGTCTCTGGG 17414 Query 282438 AATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 ||||| || || || || || || | || |||| Sbjct 17415 CGTCGTTGAAGTAAGCCGGCACCGTGACGACTGCAT 17450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740209403737950