Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2336 120 3e-22 seq1396 86.0 6e-12 >seq2336 Length=37921 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||||||||| ||||||||||| || ||| ||| || ||| Sbjct 37841 AAGTGAAGGGTAGACTCTTTCTGAATATTGTAATCAGACAGCGTCCTTCCGTCTTCCAGC 37782 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| ||||||| |||||||| || || || |||||||||||||| ||| Sbjct 37781 TGCTTGCCTGCGAAAATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCTTGAATC 37722 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||| | | || | || || | ||||| || || | |||| ||| ||||| Sbjct 37721 TTTGCCTTCACATTTTCGATTGTATCTGATGGCTCAACATCTAAAGTGATGGTCTTGCCC 37662 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || |||||||| Sbjct 37661 GTGAGGGTCTTGACAAAGATCTGCAT 37636 >seq1396 Length=53008 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || |||||||| || || |||| || ||||||||||| || || |||||||| || Sbjct 39537 TCATCAAGCTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCTGGTGGAATGCCTTCTTTA 39596 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||| | | || | ||||| | |||||||| || | ||| | Sbjct 39597 TCCTGGATTTTGGCCTTTACATTTTCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATA 39656 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || ||||| || || || ||||||||||| Sbjct 39657 GTTTTCCCCGTCAGCGTCTTCACAAAAATCTGCAT 39691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483368983333000