Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2336 127 5e-24 >seq2336 Length=37921 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || |||||||| || || || || || Sbjct 37639 CAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACTTTAGATGTTGAGCCATCAGAT 37698 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| ||||| || ||| |||||||||||| || ||||| ||| || || || Sbjct 37699 ACAATCGAAAATGTGAAGGCAAAGATTCAAGACAAGGAAGGCATTCCCCCTGATCAGCAG 37758 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||| || |||||| ||||||| |||||||| || | |||||||| | Sbjct 37759 CGTCTCATTTTCGCAGGCAAGCAGCTGGAAGACGGAAGGACGCTGTCTGATTACAATATT 37818 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTG 206382 |||||||||||||| |||||| | ||| || Sbjct 37819 CAGAAAGAGTCTACCCTTCACTTGGTTCTG 37848 Score = 89.7 bits (98), Expect = 1e-12 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 204760 CAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATC 204819 || ||| | |||||| |||||||||||||| | ||| || |||| || |||||||| || Sbjct 37848 CAGAACCAAGTGAAGGGTAGACTCTTTCTGAATATTGTAATCAGACAGCGTCCTTCCGTC 37789 Query 204820 TTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||| || ||||| || || || || ||| Sbjct 37788 TTCCAGCTGCTTGCCTGCGAAAATGAGACGCTGCTGA 37752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181690956672575