Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1396 102 8e-17 seq2336 100 3e-16 >seq1396 Length=53008 Score = 102 bits (112), Expect = 8e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTG-TGAGAGTCGTCGAGCT 134568 ||| || ||| ||| |||||||||||||||||| | || || | || || |||| Sbjct 39488 GTGCAGGGTGCTTTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCTGCCA-TCATCAAGCT 39546 Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 | || || |||||||| | ||||||||| || || || ||||||||||| || || |||| Sbjct 39547 GCTTTCCAGCAAAAATAAGACGCTGCTGGTCTGGTGGAATGCCTTCTTTATCCTGGATTT 39606 Query 134629 TTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 | || || || | ||||| || | ||||| || || ||||| ||||| || | Sbjct 39607 TGGCCTTTACATTTTCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATAGTTTTCCCCG 39666 Query 134689 TTAAAGTTTTAACGAAAATTTGCATTTT 134716 | | || || || ||||| ||||| || Sbjct 39667 TCAGCGTCTTCACAAAAATCTGCATCTT 39694 >seq2336 Length=37921 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| || |||| || | ||| || || || || || ||||| ||||| || | | Sbjct 37862 CCACCTCTCAGGCGCAGAACCAAGTGAAGGGTAGACTCTTTCTGAATATTGTAATCAGAC 37803 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || | ||| || ||||| |||||||| ||||| | |||||||||||| || || Sbjct 37802 AGCGTCCTTCC-GTCTTCCAGCTGCTTGCCTGCGAAAATGAGACGCTGCTGATCAGGGGG 37744 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 |||||||| || |||||||| ||| || || || | ||| || || | || || Sbjct 37743 AATGCCTTCCTTGTCTTGAATCTTTGCCTTCACATTTTCGATTGTATCTGATGGCTCAAC 37684 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | ||| ||||| || || || | || || || || || |||||| Sbjct 37683 ATCTAAAGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCATT 37635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505344227609000