Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2336 113 4e-20 seq1396 91.5 1e-13 >seq2336 Length=37921 Score = 113 bits (124), Expect = 4e-20 Identities = 168/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | || |||| ||||| || | ||||| ||||| ||||||||||| || Sbjct 37864 TGCCACCTCTCAGGCGCAGAACCAAGTGAAGGGTAGACTCTTTCTGAATATTGTAATCAG 37805 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | | ||||||| ||||| || || ||| ||||||||||||| ||||| || | Sbjct 37804 ACAGCGTCCTTCCGTCTTCCAGCTGCTTGCCTGCGAAAATGAGACGCTGCTGATCAGGGG 37745 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | || || || || ||||| |||| |||| | || |||| |||| ||| Sbjct 37744 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTCACATTTTCGATTGTATCTGATGGC-TCA 37686 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 || |||| ||| || | |||||||| || || || |||||||| ||||| | ||| Sbjct 37685 ACATCTAAAGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCATTGTTGC 37630 >seq1396 Length=53008 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 27057 TCTTTTTGAATATTGTAGTCGCTCA-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTA 27115 ||||||||||| ||||||||| | ||| || | || || ||||| || || || | Sbjct 39501 TCTTTTTGAATGTTGTAGTCGGAGAGAGTTCTGC-CATCATCAAGCTGCTTTCCAGCAAA 39559 Query 27116 AATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGT 27175 ||| |||||||| || || || || | || |||||||| ||| ||| || | | Sbjct 39560 AATAAGACGCTGCTGGTCTGGTGGAATGCCTTCTTTATCCTGGATTTTGGCCTTTACATT 39619 Query 27176 TTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCAC 27235 ||| | |||||| | | || || || || || |||| ||| |||||||| || ||||| Sbjct 39620 TTCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATAGTTTTCCCCGTCAGCGTCTTCAC 39679 Query 27236 AAAGATTTGCAT 27247 ||| || ||||| Sbjct 39680 AAAAATCTGCAT 39691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424889991035400