Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2822 84.2 2e-11 >seq2822 Length=102351 Score = 84.2 bits (92), Expect = 2e-11 Identities = 194/290 (67%), Gaps = 2/290 (1%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || |||||||| |||| | | |||||||| || || | ||| | ||||||||| Sbjct 55457 GTAAAGATGTAACGGGGGGCAGAGGCATCCTTCCCTCCCTCTTTCCGAGAGCCAAACTGT 55398 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| |||| ||| ||||||||| ||| || || ||| |||| | | Sbjct 55397 CCTACAGGCTCCAGGAAGTTAAGGTTGTTGCTGCCTACAAACCGCTGCGCCATGGTAATG 55338 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || || ||||| | ||| || || || || || |||||||||| | |||||| Sbjct 55337 ATGGTTTGCTGCAAAGATTGTTCTCCATGATGGTAGGCGCTCTGCTCCGCCACATATCCC 55278 Query 152209 GCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTG-AGACAGGCGTAAATCAC 152267 | | || ||||| ||||| || | | ||| |||||| |||| || | | ||| Sbjct 55277 GAAAGTTGTGCCACTTTCATCTCGGCTTTTGTGTTTTTCTTGAAGAC-CGCAAACAGCAC 55219 Query 152268 CTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCT 152317 ||||||||| |||| | ||||| || | || || || ||||||| Sbjct 55218 CTTGCGCTGCCCGACTTTCCACCCGTCTACAAGTTGGGGGATGGAACGCT 55169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547157345285000