Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2336 141 1e-28 seq1396 141 1e-28 >seq2336 Length=37921 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || || |||||||| || ||| | || |||||| || Sbjct 37635 AATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACTTTAGATGTTGAGCCATC 37694 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | |||| ||||||| || ||||| |||||||| || ||||| || || || Sbjct 37695 AGATACAATCGAAAATGTGAAGGCAAAGATTCAAGACAAGGAAGGCATTCCCCCTGATCA 37754 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| ||||| || || ||||| || || || | | || || | || || || Sbjct 37755 GCAGCGTCTCATTTTCGCAGGCAAGCAGCTGGAAGACGGAAGGACGCTGTCTGATTACAA 37814 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || || || || || ||||| | || |||| || | ||||| Sbjct 37815 TATTCAGAAAGAGTCTACCCTTCACTTGGTTCTGCGCCTGAGAGGTGG 37862 >seq1396 Length=53008 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| |||||||| || || || |||||||| ||||| || ||| | | Sbjct 39691 ATGCAGATTTTTGTGAAGACGCTGACGGGGAAAACTATTACCCTTGATGTGGAGCCTTCT 39632 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| ||||| ||||| || || || ||||| ||||||||| Sbjct 39631 GACACTATCGAAAATGTAAAGGCCAAAATCCAGGATAAAGAAGGCATTCCACCAGACCAG 39572 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||||||||| ||||| || || |||| | || || | ||||| || Sbjct 39571 CAGCGTCTTATTTTTGCTGGAAAGCAGCTTGATGATGGCAGAACTCTCTCCGACTACAAC 39512 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | ||||| ||| ||| || || Sbjct 39511 ATTCAAAAAGAAAGCACCCTGCA 39489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570249269854000