Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2336 140 3e-28 seq273 105 6e-18 seq1396 102 7e-17 >seq2336 Length=37921 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || ||| | || || || || || Sbjct 37636 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACTTTAGATGTTGAGCCATCA 37695 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || ||| ||||||||||| |||||||| || || ||||| Sbjct 37696 GATACAATCGAAAATGTGAAGGCAAAGATTCAAGACAAGGAAGGCATTCCCCCTGATCAG 37755 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || |||||||| | ||| | || |||||||| Sbjct 37756 CAGCGTCTCATTTTCGCAGGCAAGCAGCTGGAAGACGGAAGGACGCTGTCTGATTACAAT 37815 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| ||| | || |||||| |||| || | |||||||| Sbjct 37816 ATTCAGAAAGAGTCTACCCTTCACTTGGTTCTGCGCCTGAGAGGTGGCAT 37865 >seq273 Length=14814 Score = 105 bits (116), Expect = 6e-18 Identities = 197/287 (69%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 135474 TGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCA 135533 ||||||||||||| || | |||||| ||| |||| || |||||||| ||| | | | Sbjct 5959 TGTGGAACGCGGCGCAGCAGCAGCTGCAGCAGCAAGGGAAGATGCACGGGTTTCTAAGGA 6018 Query 135534 TGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACG 135593 |||||||||||||||||||||| |||||| | || |||| || || || | Sbjct 6019 TGTATTGGGCAAAAAAGATATTAGAATGGAGCCCTTCTCCTGATTTAGCTTTAAAAAGAG 6078 Query 135594 CAATATTTTTTAATGATTACTACAGTTTAGATGG-ACGCGATTCAAATGGCTACGTAGGT 135652 | | | ||| |||||| | | | || || ||| ||| | ||||||| ||| || Sbjct 6079 CTCTTTATTTAAATGATAAGCTTTCTCTTGACGGCACG-GATCCGAATGGCTTCGTCGGG 6137 Query 135653 TGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGC 135712 ||||||||| | || | || ||||| || ||||| || | | | |||||| Sbjct 6138 TGTATGTGGAGCGTAGCTGGACTGCATGATCAGGGCTGGAAAGAAAGGCCAATTTTTGGC 6197 Query 135713 AAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGT 135759 || ||||||| |||||| | || ||| ||| ||||| ||||| Sbjct 6198 AAAATTCGCTTCATGAACCTAGCTGGATGTCGAAGGAAATTCAATGT 6244 >seq1396 Length=53008 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| || || ||||||| ||||| ||||| || || Sbjct 39691 ATGCAGATTTTTGTGAAGACGCTGACGGGGAAAACTATTACCCTTGATGTGGAGCCTTCT 39632 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||||| || || ||||||||||| ||||| || || Sbjct 39631 GACACTATCGAAAATGTAAAGGCCAAAATCCAGGATAAAGAAGGCATTCCACCAGACCAG 39572 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || | || || | || | ||||| |||||| Sbjct 39571 CAGCGTCTTATTTTTGCTGGAAAGCAGCTTGATGATGGCAGAACTCTCTCCGACTACAAC 39512 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 |||||||| || ||| | || ||||| Sbjct 39511 ATTCAAAAAGAAAGCACCCTGCACTTGGT 39483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434871782184000