Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1396 116 3e-21 seq2336 82.4 7e-11 >seq1396 Length=53008 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||||| |||||||| || || || |||| || |||| | |||||| Sbjct 39483 ACCAAGTGCAGGGTGCTTTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCA 39542 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || || ||||| ||||||||||||||||| | || | || ||||| ||| | Sbjct 39543 AGCTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCTGGTGGAATGCCTTCTTTATCCTGG 39602 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 ||||| || | | | | || || | |||||| || | || ||| |||| Sbjct 39603 ATTTTGGCCTTTACATTTTCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATAGTTTTC 39662 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||||||||| || ||||| || |||||||| Sbjct 39663 CCCGTCAGCGTCTTCACAAAAATCTGCATCTT 39694 >seq2336 Length=37921 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| | ||| | ||||| || || || |||||| || ||||| ||||| Sbjct 37866 CATGCCACCTCTCAGGCGCAGAACCAAGTGAAGGGTAGACTCTTTCTGAATATTGTAATC 37807 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | || || | | |||| || ||||| ||||| || || || ||||||||||| || | Sbjct 37806 AGACAGCGTCCTTCCGTCTTCCAGCTGCTTGCCTGCGAAAATGAGACGCTGCTGATCAGG 37747 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACT 39232 ||| | || || |||| | ||| | | || || | | | | ||||| | || Sbjct 37746 GGGAATGCCTTCCTTGT-CTTGAATCTTTGCCTTCACATTTTCGATTGTATCTGATGGCT 37688 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || | ||||| | || ||||| || || || |||||||| ||||| Sbjct 37687 CAACATCTAAAGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 37636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429500709128975