Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2336 147 5e-30 seq2897 116 9e-21 seq2941 86.0 1e-11 >seq2336 Length=37921 Score = 147 bits (162), Expect = 5e-30 Identities = 146/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| || || || ||||| || | ||||||||| | || || || || || Sbjct 37848 CAGAACCAAGTGAAGGGTAGACTCTTTCTGAATATTGTAATCAGACAGCGTCCTTCCGTC 37789 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || ||||| || || || || || || || ||||| ||||||||||| Sbjct 37788 TTCCAGCTGCTTGCCTGCGAAAATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTC 37729 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||| |||||| ||||||| |||||| || ||||| | || || ||||| ||||| || Sbjct 37728 TTGAATCTTTGCCTTCACATTTTCGATTGTATCTGATGGCTCAACATCTAAAGTGATGGT 37669 Query 225681 CTTGCCCGT 225689 ||||||||| Sbjct 37668 CTTGCCCGT 37660 >seq2897 Length=29064 Score = 116 bits (128), Expect = 9e-21 Identities = 110/139 (79%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 |||||| || ||||||| ||||| |||||| ||| ||||||| |||| ||||||||| Sbjct 28301 TATTTCAAGCTCTGGTAAGGTTCTTCGCGTTACATCGAATTAAATTACATGCTCCACCGC 28242 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 || | | | | |||||| || |||||||||| | |||||| |||| |||||||| || Sbjct 28241 TTGTGCGAGCCCCCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCGTACTACTCAGGCGG 28182 Query 7844 AATA-TTTACGCGTTAGCT 7861 ||| || ||||||||||| Sbjct 28181 GATACTTAACGCGTTAGCT 28163 >seq2941 Length=28261 Score = 86.0 bits (94), Expect = 1e-11 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||||||||| || |||||||||||||| ||||||||||||||||| || Sbjct 24717 GAAAATTTGGCCATCAGTAATTGAAATAACATTTGTAGGAATATAAGCAGAAACATCTCC 24776 Query 4530 TG 4531 || Sbjct 24777 TG 24778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192400179951050