Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1396 118 2e-21 seq2336 113 1e-19 >seq1396 Length=53008 Score = 118 bits (130), Expect = 2e-21 Identities = 145/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 151914 TCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGA 151971 |||||||| |||||||| |||| | |||||| ||||| || || ||||| || || | Sbjct 39501 TCTTTTTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCAAGCTGCTTT--CCAGCAA 39558 Query 151972 AGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAG 152031 | ||||| | ||||||||| | | || ||||| || || || ||||| || ||| Sbjct 39559 AAATAAGACGCTGCTGGTCTGGTGGAATGCCTTCTTTATCCTGGATTTTGGCCTTTACAT 39618 Query 152032 TCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCA 152091 | || | |||| ||| ||| || ||||| ||||||||||| ||||| || ||||||| Sbjct 39619 TTTCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATAGTTTTCCCCGTCAGCGTCTTCA 39678 Query 152092 CGAAGACCTGCATTTT 152107 | || | |||||| || Sbjct 39679 CAAAAATCTGCATCTT 39694 >seq2336 Length=37921 Score = 113 bits (124), Expect = 1e-19 Identities = 151/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||||||||| || || |||||||| | | || || || ||||| | Sbjct 37842 CAAG-TGAAGGGTAGACTCTTTCTGAATATTGTAATCAGACAGCGTCCTTCCGTCTTCCA 37784 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || ||||| || || | |||||| || | | || |||||||| ||||||| Sbjct 37783 GCTGCTTGCCTGCGAAAATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCTTGAA 37724 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| || ||| | || | | ||||| ||| || || | ||| || || |||| Sbjct 37723 TCTTTGCCTTCACATTTTCGATTGTATCTGATGGCTCAACATCTAAAGTGATGGTCTTGC 37664 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||||| ||||| || |||| ||||||| Sbjct 37663 CCGTGAGGGTCTTGACAAAGATCTGCATT 37635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153694032953825