Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1396 114 1e-20 >seq1396 Length=53008 Score = 114 bits (126), Expect = 1e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| ||||| || || |||||||| ||||||||||| || | | || || Sbjct 39483 ACCAAGTGCAGGGTGCTTTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCA 39542 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| || || || || || ||||| ||||| | |||| || || || ||| | Sbjct 39543 AGCTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCTGGTGGAATGCCTTCTTTATCCTGG 39602 Query 41774 ATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 ||||| ||| || || | |||||| | |||||| || | || || |||| Sbjct 39603 ATTTTGGCCTTTACATTTTCG--ATAGTGTCAGAAGGCTCCACATCAAGGGTAATAGTTT 39660 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | |||||||||||||| || ||||||||||| || Sbjct 39661 TCCCCGTCAGCGTCTTCACAAAAATCTGCATCTT 39694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462254446790000