Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2330 111 1e-19 seq3112 98.7 9e-16 seq3187 93.3 4e-14 >seq2330 Length=2393 Score = 111 bits (122), Expect = 1e-19 Identities = 155/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || |||||| || | |||||||| || ||||||||||||||| | || | ||| Sbjct 223 CAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGAAAGCGTCCTGCCATC 164 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || || ||| | ||||||||||||||||| ||||| || |||||||| || Sbjct 163 CTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCCTCCTTATC 104 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCG 118704 ||| || || || | |||| || || | || | ||||| || | || | | Sbjct 103 CTGAATCTTCGCCTTCACATTCTCGATCGTATCTGATGGT-TCGACATCCAAAGTGATGG 45 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || || |||||||| || || || ||||||||| Sbjct 44 TCTTTCCAGTCAGAGTCTTCACGAAGATCTGCATG 10 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || |||||| || | |||||||| || ||||||||||||||| | || | ||| Sbjct 451 CAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGAAAGCGTCCTGCCATC 392 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || || ||| | ||||||||||||||||| ||||| || |||||||| || Sbjct 391 CTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCCTCCTTATC 332 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || | |||| || || | ||| || || | || | || Sbjct 331 CTGAATCTTCGCCTTCACATTCTCGATAGTATCTGATGGCTCAACATCCAAAGTGATGGT 272 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || |||||||| || || || ||||||||| Sbjct 271 CTTTCCAGTCAGAGTCTTCACGAAGATCTGCATG 238 >seq3112 Length=30853 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 |||||| ||||| || || ||| | ||||||||||||||||||||||| || |||||||| Sbjct 30835 ATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTT 30776 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 || ||| || || || | ||||| |||||| | ||| || || | || | Sbjct 30775 ATCCTGAATCTTCGCCTTTACGTTTTCGATGGTGTCTGATGGCTCAACATCCAAAGTGAT 30716 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || |||||||| || || || ||||||||| Sbjct 30715 GGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCATG 30679 >seq3187 Length=81671 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || || ||||| ||||| ||| | ||| | || || Sbjct 67581 ACCAAGTGAAGAGTGCTTTCCTTCTGAATATTGTAGTCGGAGAGAGTTCTGCCGTCATCA 67522 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||||||| |||| || |||||||| || ||||| || ||||| ||||| | Sbjct 67521 AGCTGCTTTCCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGA 67462 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||||| ||||| | ||| || || | ||| | || || Sbjct 67461 ATCTTCGCCTTCACATTTTCGATAGTGTCGGAAGGCTCCACATCAAGGGTAATAGTCTTC 67402 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || |||||||||||||| Sbjct 67401 CCCGTCAGCGTCTTCACAAAAATCTGCAT 67373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433811556034288