Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1946 95.1 1e-14 seq270 91.5 1e-13 seq3296 84.2 2e-11 >seq1946 Length=2437 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 37207 TTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTC 37266 |||| ||||||||| |||||| ||| ||||||||||| | || || | ||| || Sbjct 53 TTACCTAATATTTGTGATGTACTTGCTGTAGGCATTGGAGATACTAATAAAGAATTCCTT 112 Query 37267 AATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG--GGT 37324 ||||||| | || || ||| ||||||| | |||||| |||||| | | | ||| Sbjct 113 AATCCATACTTTTTTATCTTCTCTTTTAGTCCTACCCAATCACATAAACCGCTAGATGGT 172 Query 37325 TCTTTA-ACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTC 37383 | | | ||| | |||| ||||||| | |||||| || |||||| | | ||||||| Sbjct 173 TGTACACCCCATAAATCAAATTGTAGTAACCCTTTAGATGCAGGAGAACCTTCATATGTC 232 Query 37384 TCATAAGGTCC 37394 |||||||| || Sbjct 233 TCATAAGGACC 243 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/170 (73%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 38016 TACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATA 38075 ||| | || |||||||| |||||||| ||||| |||| ||||| |||| | | || Sbjct 1457 TACTCTTTGCATAAATAGATCAGGTATCCATAGAGCAGGAAATAGATCTCTTGCCCTCAT 1516 Query 38076 TTCTTCGTTCCCTACATTCTTTCTTA-AGCTTAGAAAATCGAATATATCAGCGTGCCATG 38134 ||||| || || ||| ||||||| | || |||| || |||||||| || ||||||| Sbjct 1517 CTCTTCTTTGCCATGATTTTTTCTTATATCTAAGAAT-TCAAATATATCTGCATGCCATG 1575 Query 38135 GTTCT--ATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGAT 38182 ||||| ||||| | | | | | |||| |||||| | ||||| |||| Sbjct 1576 GTTCTAGATATACAGCAAGACT--TCCTTTTCTTTTCCCTCCTCCTTGAT 1623 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 37404 AGCTAGTTCGCA-ACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATAT 37462 ||| |||| ||| ||||| || ||| ||||| ||||| ||||| || | | | | Sbjct 1045 AGCAAGTT-GCATACTAGCCTCGCATGCAGCATAGTATATACACTCGAAGATATTTTTGT 1103 Query 37463 TTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACA-TCAGCC 37521 ||||| ||| ||||||| ||| || | | || | || || | || ||| ||||| Sbjct 1104 TTAATTGTTTAGCTTCTTGTGAATCAAAAGGA-AGACGAAGAAGAAGAAAACAATCAGCT 1162 Query 37522 AAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGAC-GATTCTAT 37580 || || || ||||| |||||||| ||||||||||| |||||| | || | | ||| Sbjct 1163 AATCCTTGTACACCTATACCTATAGGTCTATGTTTTTTATTA-CTATATTCTGCCTCTTG 1221 Query 37581 CACTGGATAATAATTGATATCTATTATTTTATTTAGATT 37619 | ||||||||||| |||| || || ||||| ||||| Sbjct 1222 TATAGGATAATAATTTTTATCAATAATATTATTAAGATT 1260 >seq270 Length=46145 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/223 (70%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 11279 AATTAAAAATCTATATCCGTAGAAAATATATTCTCTTCTTTATTTGTAAACA---CCCCC 11335 ||||| || ||| ||| | | ||| | | ||| ||||||| ||| || | || Sbjct 45862 AATTAGAAGTCTGCATCTAGACAGAATGTTTGTTCTGCTTTATTAATAACCATAACTCCT 45921 Query 11336 ATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATAT- 11394 |||||| || || | ||||| || || || ||||| || || |||| || || || Sbjct 45922 GCCTTTTGGTAATCCCCAACTCTTCTCTCAAAGAAATTTGTTTTTCCTTGTAAAGAAATC 45981 Query 11395 ATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGT 11454 ||| |||||||| ||||||||| |||||| || | ||||| | ||||| Sbjct 45982 ATA-TCCATAAAATCAAAAGGATTTCTTACATTAAATATCTTTTCTCCTCCTAAACAAAC 46040 Query 11455 TAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAA 11497 |||||| | ||| || || ||||||||||| |||||||||||| Sbjct 46041 TAATAAACGATCAGCAACAAATTCTATATATTGAGACATTAAA 46083 >seq3296 Length=20226 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/128 (76%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 11914 TAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCG 11973 ||| || || | || || ||||||||||| | || ||||||||| ||||||||| || Sbjct 1011 TAACCTGTAAGTCTCGGAGTGAATATTTTCGACGGCAATTTGAAATGCATAGAAACTTCT 1070 Query 11974 TGCCTCTGAACACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATAC 12032 ||||| | || || || |||| |||||| |||||||||||||| |||| |||| Sbjct 1071 CGCCTCGGGGATTTGAACTTCTGACAT-AAATCTCTCCGCTAAATTCTCCATTACTATAC 1129 Query 12033 CATCACTA 12040 | |||||| Sbjct 1130 CGTCACTA 1137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468503927220160