Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1946 107 3e-18 seq270 84.2 3e-11 >seq1946 Length=2437 Score = 107 bits (118), Expect = 3e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 79338 ACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGC 79397 ||| ||||| |||| | || || || ||||| || || || || | | || || Sbjct 1057 ACTAGCCTCGCATGCAGCATAGTATATACACTCGAAGATATTTTTGTTTAATTGTTTAGC 1116 Query 79398 TTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACC 79457 |||| | |||||| ||| | | |||| ||| || ||||||||||| ||||| Sbjct 1117 TTCTTGTGAATCAAAAGGAAGACGAAGAAGAAGAAAACAATCAGCTAATCCTTGTACACC 1176 Query 79458 AATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATT 79517 ||||| |||||||||||| | |||||| | ||| || ||| | |||||||||||||| Sbjct 1177 TATACCTATAGGTCTATGTTTTTTATTACTATATTCTGCCTCTTGTATAGGATAATAATT 1236 Query 79518 AATATCTATAATTTTATTGAGATT 79541 |||| ||||| ||||| ||||| Sbjct 1237 TTTATCAATAATATTATTAAGATT 1260 >seq270 Length=46145 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 ||||||||| |||||||| || || || | | | || || ||||| |||||||||| Sbjct 45912 CATAACTCCTGCCTTTTGGTAATCCCCAACTCTTCTCTCAAAGAAATTTGTTTTTCCTTG 45971 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 49775 || || || | ||||| |||||||| ||||| | |||||| | || |||| ||| Sbjct 45972 TAAAGAAATCATATCCATAAAATCAAAAGGATTTCTTACATTAAATATCTTTTCTCCTCC 46031 Query 49776 CAATTCAGA--AATCAATCTATCCGCGACAAATTCTATATAT 49815 || || | ||| || | ||| || ||||||||||||||| Sbjct 46032 TAAA-CAAACTAATAAA-CGATCAGCAACAAATTCTATATAT 46071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718236801124960