Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq270 100 2e-16 seq3296 82.4 7e-11 >seq270 Length=46145 Score = 100 bits (110), Expect = 2e-16 Identities = 122/163 (75%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| || || | ||||||| | ||||| || ||||||||||||| ||| ||||| | Sbjct 45925 TTTTGGTAATCCCCAACTCTTCTCTCAAAGAAATTTGTTTTTCCTTGTAAAGAAATCATA 45984 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAAT-AGTAT-TTTTTACACCCTAATTCTAGTA 12977 ||||||||||| |||||| |||| ||| | | ||| |||| | ||||| | || Sbjct 45985 TCCATAAAATCAAAAGGA--TTTCTTACATTAAATATCTTTTCTCCTCCTAAACAAACTA 46042 Query 12978 ACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 | || | ||||||||||| ||||| || || ||||||||| Sbjct 46043 ATAAACGATCAGCAACAAATTCTATATATTGAGACATTAAATC 46085 >seq3296 Length=20226 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 13438 TAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCT 13497 ||| || || | || || ||||||||||| | || ||||| || |||| |||| ||| Sbjct 1011 TAACCTGTAAGTCTCGGAGTGAATATTTTCGACGGCAATTTGAAATGCATAGAAACTTCT 1070 Query 13498 AGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCC 13557 ||||| | | |||||||| || |||||| || ||||| || || | ||||| || Sbjct 1071 CGCCTCGGGGATTTGAACTTCTGACATAAATCTCTCCGCTAAATTCTCCATTACTATACC 1130 Query 13558 GTCACTA-GCAGCaaaaaaaGCAAGTA 13583 ||||||| || ||||||| ||||| Sbjct 1131 GTCACTATAAAGGAAAAAAAAGAAGTA 1157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430963679740728