Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2330 102 7e-17 >seq2330 Length=2393 Score = 102 bits (112), Expect = 7e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCC 48574 ||| |||||||| || |||||| |||||||||||||| | || ||| || | ||| Sbjct 448 CACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGA-AAGCGTC-CTGCCATCC 391 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 ||||||||||| ||| || |||| | |||||||||||| || | || ||||| ||| Sbjct 390 TCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCCTCCTTATCC 331 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| ||| ||| | | | | || ||||| | | ||| || | || ||||| Sbjct 330 TGAATCTTCGCCTTCACATTCTCGATAGTATCTGATGGCTCAACATCCAAAGTGATGGTC 271 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || ||||| ||||| || |||||||| Sbjct 270 TTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 239 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCC 48574 ||| |||||||| || |||||| |||||||||||||| | || ||| || | ||| Sbjct 220 CACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGA-AAGCGTC-CTGCCATCC 163 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 ||||||||||| ||| || |||| | |||||||||||| || | || ||||| ||| Sbjct 162 TCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCCTCCTTATCC 103 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| ||| ||| | | | | || ||||| | | || || | || ||||| Sbjct 102 TGAATCTTCGCCTTCACATTCTCGATCGTATCTGATGGTTCGACATCCAAAGTGATGGTC 43 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || ||||| ||||| || |||||||| Sbjct 42 TTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421232902427564