Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3127 123 4e-24 >seq3127 Length=30189 Score = 123 bits (136), Expect = 4e-24 Identities = 175/246 (71%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||| || ||||| || |||||||| || ||||||||||| || ||| | || Sbjct 8508 CTTCGTGATAATATTCAAGGTATAACCAAGCCTGCAATCCGTCGTCTTGCACGTAGAGGA 8449 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| | || || | | ||||| || ||||||| ||| || ||| | ||| Sbjct 8448 GGAGTTAAGCGTATATCCGGTCTTATTTATGAGGAAATTCGTGGTGTATTAAAGGTTTTC 8389 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| |||| | ||| | | ||||| ||||| || | | | ||||| || Sbjct 8388 CTTGAGAATATTATTAAGGATTCAGTTACTTATACTGAGCATGCAAGAAGAAAGACCGTT 8329 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||||||||| || | | || | |||||||| | | || |||||||| Sbjct 8328 ACTGCTATGGATATCGTGTACTCTCTTAAGAGGCAAGGCCGCACTCTGTACGGTTTTGGT 8269 Query 16694 AGTTAA 16699 ||||| Sbjct 8268 GGTTAA 8263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071941409852