Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq270 102 9e-17 >seq270 Length=46145 Score = 102 bits (112), Expect = 9e-17 Identities = 163/229 (71%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 21121 ATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttt--tGAC-ATAAT 21177 ||| | ||| || || ||||||| |||| | ||| |||| || | || |||| Sbjct 45858 ATTGAATTAGAAGTCTGCATCTAGACAGAATGTTTGTTCTGCTTTATTAATAACCATAAC 45917 Query 21178 TCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGA 21237 ||| ||||| ||||| | ||||||| | || || |||||||| ||||||| || || Sbjct 45918 TCCTGCCTTTTGGTAATCCCCAACTCTTCTCTCAAAGAAATTTGTTTTTCCTTGTAAAGA 45977 Query 21238 TATAGATTCCATAAAATCAAATGGATTT-TCAGATTTAAATATTTTATTACAACCCAGTT 21296 || |||||||||||||| |||||| | | | |||||||| || | | || | Sbjct 45978 AATCATATCCATAAAATCAAAAGGATTTCTTACA-TTAAATATCTTTTCTCCTCCTAAAC 46036 Query 21297 CTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTC 21345 |||||| | ||| || |||||||||||||||||| ||||||| || Sbjct 46037 AAACTAATAAACGATCAGCAACAAATTCTATATATTGAGACATTAAATC 46085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531877103819360