Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3187 127 1e-24 seq3030 123 2e-23 seq2736 123 2e-23 seq421 123 2e-23 seq2330 114 9e-21 seq754 111 1e-19 seq2729 107 1e-18 seq901 98.7 7e-16 seq3275 87.8 1e-12 >seq3187 Length=81671 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 27816 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 27875 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| |||||| || |||||||||| Sbjct 27876 TAATCCATTCATGCACGTCACAAACTAGATGACGA 27910 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| ||||||||||| ||||| ||||||||||| || || | | | |||| || Sbjct 67581 ACCAAGTGAAGAGTGCTTTCCTTCTGAATATTGTAGTCGGAGAGAGTTCTGCCGTCATCA 67522 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || ||||| || || || ||||| || || || | || | || ||||||||| | Sbjct 67521 AGCTGCTTTCCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGA 67462 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||||||||| | || ||| || | || || || | |||||||| || Sbjct 67461 ATCTTCGCCTTCACATTTTCGATAGTGTCGGAAGGCTCCACATCAAGGGTAATAGTCTTC 67402 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||||||| || ||||| || |||||||| || Sbjct 67401 CCCGTCAGCGTCTTCACAAAAATCTGCATCTT 67370 >seq3030 Length=1516 Score = 123 bits (136), Expect = 2e-23 Identities = 83/93 (89%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||||||||||||||| || |||||||| Sbjct 219 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 278 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| ||||||| |||||||||||| ||||| Sbjct 279 TAATCCATTCATGCACGTCACTAATTAAATGAC 311 >seq2736 Length=1641 Score = 123 bits (136), Expect = 2e-23 Identities = 83/93 (89%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||||||||||||||| || |||||||| Sbjct 303 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGATAGGGAGAGTGGGAATCTCGT 362 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| ||||||| |||||||||||| ||||| Sbjct 363 TAATCCATTCATGCACGTCACTAATTAAATGAC 395 >seq421 Length=1950 Score = 123 bits (136), Expect = 2e-23 Identities = 83/93 (89%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||||||||||||||| || |||||||| Sbjct 1517 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1458 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| ||||||| |||||||||||| ||||| Sbjct 1457 TAATCCATTCATGCACGTCACTAATTAAATGAC 1425 >seq2330 Length=2393 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||||||||| |||||||||||| || |||||| ||||| |||||||| || Sbjct 237 CCACCTCTCAAACGCAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGAA 178 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | || || | || || ||||| || || || || || ||||| | || Sbjct 177 AGCGTCCTGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCAGGAGGA 118 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || || ||| ||| || ||||||||||| || |||||| ||| || Sbjct 117 ATACCCTCCTTATCCTGAATCTTCGCCTTCACATTCTCGATCGTATCTGATGGTTCGACA 58 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || || || || |||| || |||||||| ||||||||| Sbjct 57 TCCAAAGTGATGGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCATG 10 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||||||||||| |||||||||||| || |||||| ||||| |||||||| || Sbjct 465 CCGCCTCTCAAACGCAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGAA 406 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | || || | || || ||||| || || || || || ||||| | || Sbjct 405 AGCGTCCTGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCAGGAGGA 346 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || || ||| ||| || ||||||||||| || ||||||| ||||| Sbjct 345 ATACCCTCCTTATCCTGAATCTTCGCCTTCACATTCTCGATAGTATCTGATGGCTCAACA 286 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || || || || |||| || |||||||| ||||||||| Sbjct 285 TCCAAAGTGATGGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCATG 238 >seq754 Length=12608 Score = 111 bits (122), Expect = 1e-19 Identities = 83/96 (86%), Gaps = 6/96 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||| |||||||||| |||||||||||||||||| || |||||||| Sbjct 930 AAGCCCGTTCCCTTTGCTGTGGTTTTGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 989 Query 25957 TAATCCTTTCATGCGCGTCACTAA-TTAGATGACGA 25991 |||||| ||||||| | ||||||| || |||||||| Sbjct 990 TAATCCATTCATGCACCTCACTAATTTTGATGACGA 1025 Score = 82.4 bits (90), Expect = 5e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||| |||| ||||||| ||||| | || |||||||||||| ||||||||| | Sbjct 1126 CTCTCTTTTCGAAGTCCTTTTCACATTTCCTTAACAGTACTTGTTCGCCATCGGTCTCAC 1185 Query 20007 GGTAATATTTAGCCT 20021 | |||||||||||| Sbjct 1186 GTCAATATTTAGCCT 1200 >seq2729 Length=1445 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 325 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCAC 266 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||| ||| Sbjct 265 GTCAGTATTTAGCTTTA 249 >seq901 Length=10758 Score = 98.7 bits (108), Expect = 7e-16 Identities = 76/89 (85%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGGGTA-ATCTCGTTAAT 25960 ||||| |||||||||||||||| ||||||||||||||| | | | | |||||||||| Sbjct 958 AAGCCTGTTCCCTTGGCTGTGGATTCGCTAGATAGTAGGGACAGTGAAGGTCTCGTTAAT 899 Query 25961 CCTTTCATGCGCGTCACTAATTAGATGAC 25989 || ||||||| |||||||||||| ||||| Sbjct 898 CCATTCATGCACGTCACTAATTAAATGAC 870 >seq3275 Length=145734 Score = 87.8 bits (96), Expect = 1e-12 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA-GGGGGTAATCTCGTTAAT 25960 |||||||||| |||||| ||||||||| ||||||||||| | | || | |||||| Sbjct 101349 AAGCCCGTTCACTTGGCCGTGGTTTCGGTAGATAGTAGACACAGTGGGCTTACCGTTAAA 101290 Query 25961 CCTTTCATGCGCGTCACTAATTAGATGACG 25990 || ||||||| ||||||||||||| ||||| Sbjct 101289 CCATTCATGCACGTCACTAATTAGGTGACG 101260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334932651149684