Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2330 122 7e-23 seq3187 91.5 1e-13 >seq2330 Length=2393 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || || ||||| | || || ||| | | Sbjct 11 ATGCAGATCTTCGTGAAGACTCTGACTGGAAAGACCATCACTTTGGATGTCGAACCATCA 70 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || ||||| || |||||||||||||| || ||||| Sbjct 71 GATACGATCGAGAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGATCAG 130 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | |||||| | | || | |||||||||||| Sbjct 131 CAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGGCAGGACGCTTTCCGATTACAAC 190 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || ||| | ||||| || |||| ||| | || || Sbjct 191 ATTCAGAAGGAGTCTACCCTTCATTTGGTGCTGCGTTTGAGAGGTGG 237 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || || ||||| | || || || | | Sbjct 239 ATGCAGATCTTCGTGAAGACTCTGACTGGAAAGACCATCACTTTGGATGTTGAGCCATCA 298 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || ||||| || |||||||||||||| || ||||| Sbjct 299 GATACTATCGAGAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGATCAG 358 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | |||||| | | || | |||||||||||| Sbjct 359 CAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGGCAGGACGCTTTCCGATTACAAC 418 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || ||| | ||||| || |||| ||| | || || Sbjct 419 ATTCAGAAGGAGTCTACCCTTCATTTGGTGCTGCGTTTGAGAGGCGG 465 >seq3187 Length=81671 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| |||||||| || || | || || || || | || ||||| ||||| | Sbjct 67370 AAGATGCAGATTTTTGTGAAGACGCTGACGGGGAAGACTATTACCCTTGATGTGGAGCCT 67429 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| || | || || | || || ||||| ||||| ||||||||||| || || Sbjct 67430 TCCGACACTATCGAAAATGTGAAGGCGAAGATTCAGGACAAAGAGGGTATTCCTCCAGAC 67489 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || ||||| || || || || ||| | || || | | || ||||||| ||| Sbjct 67490 CAGCAGCGCCTTATCTTCGCTGGAAAGCAGCTTGATGACGGCAGAACTCTCTCCGACTAC 67549 Query 22396 AACATTCAAAAAGAA 22410 || ||||| || ||| Sbjct 67550 AATATTCAGAAGGAA 67564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419709768589660