Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2330 102 2e-16 seq3112 87.8 4e-12 >seq2330 Length=2393 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || || |||| ||||| | || || || | || || || ||||| Sbjct 201 TCCTTCTGAATGTTGTAATCGGAAAGCGTCCTGCCATCCTCCAGCTGCTTGCCGGCGAAA 142 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| ||| | || || || || |||||||| || ||||| ||||| || Sbjct 141 ATGAGACGCTGCTGATCAGGAGGAATACCCTCCTTATCCTGAATCTTCGCCTTCACATTC 82 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | ||| || || | ||||| ||||| || ||||||||||| ||| Sbjct 81 TCGATCGTATCTGATGGTTCGACATCCAAAGTGATGGTCTTTCCAGTCAGAGTCTTCACG 22 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 21 AAGATCTGCAT 11 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || || |||| ||||| | || || || | || || || ||||| Sbjct 429 TCCTTCTGAATGTTGTAATCGGAAAGCGTCCTGCCATCCTCCAGCTGCTTGCCGGCGAAA 370 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| ||| | || || || || |||||||| || ||||| ||||| || Sbjct 369 ATGAGACGCTGCTGATCAGGAGGAATACCCTCCTTATCCTGAATCTTCGCCTTCACATTC 310 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| ||| | || || || | ||||| ||||| || ||||||||||| ||| Sbjct 309 TCGATAGTATCTGATGGCTCAACATCCAAAGTGATGGTCTTTCCAGTCAGAGTCTTCACG 250 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 249 AAGATCTGCAT 239 >seq3112 Length=30853 Score = 87.8 bits (96), Expect = 4e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 288301 TCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAA 288360 |||| ||||| | || || || | || || || ||||| || |||||||| ||| Sbjct 30852 TCGGAAAGCGTCCTGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCG 30793 Query 288361 TCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 || || || || |||||||| || ||||| || |||||||| || | || | Sbjct 30792 GGAGGAATACCCTCCTTATCCTGAATCTTCGCCTTTACGTTTTCGATGGTGTCTGATGGC 30733 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||||| ||||| || ||||||||||| ||||| |||||||| Sbjct 30732 TCAACATCCAAAGTGATGGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 30680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179600532556392