Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2330 116 4e-21 seq3112 86.0 6e-12 seq3187 82.4 8e-11 >seq2330 Length=2393 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| | ||| | ||||| | ||||| || || || || |||||||||||||| | Sbjct 465 CCGCCTCTCAAACGCAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGAA 406 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | || || |||||||||||||| ||||||| |||||||| || |||||| Sbjct 405 AGCGTCCTGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCAGGAGGA 346 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| ||| ||| | ||||| | || || Sbjct 345 ATACCCTCCTTATCCTGAATCTTCGCCTTCACATTCTCGATAGTATCTGATGGCTCAACA 286 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | |||||| || |||| ||| || ||||| || ||||| Sbjct 285 TCCAAAGTGATGGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 239 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||||| || || || || |||||||||||||| | | || | | || Sbjct 222 AGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGAAAGCGTCCTGCCATCC 163 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| ||||||| |||||||| || |||||||| || || || || Sbjct 162 TCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCCTCCTTATCC 103 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | ||||| | || || || | ||| | |||| Sbjct 102 TGAATCTTCGCCTTCACATTCTCGATCGTATCTGATGGTTCGACATCCAAAGTGATGGTC 43 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || |||| ||| || ||||| || ||||| Sbjct 42 TTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 11 >seq3112 Length=30853 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 || || |||||||||||||| ||||||| |||||||| ||||||||||| || || || Sbjct 30834 TCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTA 30775 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || || || || |||||| || | || || | || || || | ||| | | Sbjct 30774 TCCTGAATCTTCGCCTTTACGTTTTCGATGGTGTCTGATGGCTCAACATCCAAAGTGATG 30715 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || |||| ||| || ||||| || ||||| Sbjct 30714 GTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 30680 >seq3187 Length=81671 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 64252 TTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATA 64311 ||| || ||||| ||||| || | || || | |||| ||||||||||| || || | Sbjct 67564 TTCCTTCTGAATATTGTAGTCGGAGAGAGTTCTGCCGTCATCAAGCTGCTTTCCAGCGAA 67505 Query 64312 AATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAAC 64371 || || ||||||||||| |||||||| || ||||| || || || || ||| ||| Sbjct 67504 GATAAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGAATCTTCGCCTTCACATT 67445 Query 64372 CTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 || | || || | ||||| || | || | ||||| || |||| || || || Sbjct 67444 TTCGATAGTGTCGGAAGGCTCCACATCAAGGGTAATAGTCTTCCCCGTCAGCGTCTTCAC 67385 Query 64432 GAAAATTTGCATTTT 64446 ||||| ||||| || Sbjct 67384 AAAAATCTGCATCTT 67370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499622540824160