Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2330 145 2e-29 seq3112 138 3e-27 seq3187 123 6e-23 >seq2330 Length=2393 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || |||||||| || | |||||| || | | ||||| ||||| ||||||||| Sbjct 213 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGAAAGCGTCCTGCCATCCTCCAGCTGC 154 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || |||||||| |||||||||||||| || ||| ||| || || ||||||||||| Sbjct 153 TTGCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCCTCCTTATCCTGAATCTTC 94 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 |||||| |||| || |||| || ||| |||||||| ||||| ||||| || || Sbjct 93 GCCTTCACATTCTCGATCGTATCTGATGGTTCGACATCCAAAGTGATGGTCTTTCCAGTC 34 Query 199607 AGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || Sbjct 33 AGAGTCTTCACGAAGATCTG 14 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || |||||||| || | |||||| || | | ||||| ||||| ||||||||| Sbjct 441 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGAAAGCGTCCTGCCATCCTCCAGCTGC 382 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || |||||||| |||||||||||||| || ||| ||| || || ||||||||||| Sbjct 381 TTGCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCCTCCTTATCCTGAATCTTC 322 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 |||||| |||| || |||| || || |||||||| ||||| ||||| || || Sbjct 321 GCCTTCACATTCTCGATAGTATCTGATGGCTCAACATCCAAAGTGATGGTCTTTCCAGTC 262 Query 199607 AGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || Sbjct 261 AGAGTCTTCACGAAGATCTG 242 >seq3112 Length=30853 Score = 138 bits (152), Expect = 3e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 199466 GTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATT 199525 ||||| ||||| ||||||||||| |||||||| |||||||||||||| || ||| ||| Sbjct 30843 GTCCTGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATA 30784 Query 199526 CCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCC 199585 || || ||||||||||| ||| ||| ||||| |||||||| || || |||||| Sbjct 30783 CCCTCCTTATCCTGAATCTTCGCCTTTACGTTTTCGATGGTGTCTGATGGCTCAACATCC 30724 Query 199586 AACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| ||||| || || ||||| ||||| || || || Sbjct 30723 AAAGTGATGGTCTTTCCAGTCAGAGTCTTCACGAAGATCTG 30683 >seq3187 Length=81671 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| ||||| || | |||||||| | | ||| || || || || ||||| Sbjct 67576 GTGAAGAGTGCTTTCCTTCTGAATATTGTAGTCGGAGAGAGTTCTGCCGTCATCAAGCTG 67517 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 |||||| |||||||| || ||||||||||| ||| ||| || ||| ||||||||||| Sbjct 67516 CTTTCCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGAATCTT 67457 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 |||||| ||||| ||||| | | || ||||| | || || ||||| ||||| Sbjct 67456 CGCCTTCACATTTTCGATAGTGTCGGAAGGCTCCACATCAAGGGTAATAGTCTTCCCCGT 67397 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 || || ||||||||||| || Sbjct 67396 CAGCGTCTTCACAAAAATCTG 67376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178867766018788