Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq648 286 1e-71 seq655 221 5e-52 seq2966 123 1e-22 seq2330 111 6e-19 seq1850 84.2 9e-11 >seq648 Length=64315 Score = 286 bits (316), Expect = 1e-71 Identities = 1089/1670 (65%), Gaps = 77/1670 (5%) Strand=Plus/Minus Query 450913 AGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAA 450972 |||| | || || ||| | || || || | ||||||||||||||| | | |||| Sbjct 2091 AGCAGTAGGTATAGATTTGGGTACAACATATTCATGTGTAGGTGTATGGAAGAATGATGG 2032 Query 450973 TGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTAC 451032 |||||| || ||||||||||| ||||| || || || ||||| | ||| ||||| Sbjct 2031 TGTAGAGATAATAGCAAATGATCAAGGTAATCGTACAACCCCTTCTTATGTAGCATTTAC 1972 Query 451033 GGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAA 451090 |||| |||| ||| | ||||| | || || || |||| |||| ||| | | Sbjct 1971 GGATACAGAGAGATTAGTAGGGGATGCAGCAAAGAATCA--GGTAGCAAGGAATCCAGAG 1914 Query 451091 AACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAA 451150 || ||||||| |||||| ||| | || || || | | |||||| ||| ||||||| Sbjct 1913 AATACAGTATTTGATGCAAAAAGGTTGATAGGTAGGAAGTATGACGATCCAGCTGTACAG 1854 Query 451151 AAAGAGAAAAA--ATT---CTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATA 451205 ||| | || ||| | ||| || | | | | | | | ||| || || | | Sbjct 1853 GCAGACATGAAGCATTGGCCATTTATTGTTAAG--GGAGGACCAGGAGGTAAACCATTAA 1796 Query 451206 TTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGG 451265 | |||||||||| |||| || ||||| ||| |||||| || || | |||| Sbjct 1795 TAGAAGTAAATTACCAAGGAATAAAGAAAACATTTCATCCTGAGGAGATAAGTGCCATGG 1736 Query 451266 TTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAG 451325 | | | || ||||| || | || ||||||| ||| ||| | | | || |||| Sbjct 1735 TATTAATGAAGATGAAGGAGATTGCTGAACAATTTATAGGTAAAGAAATAAAAGAAGCAG 1676 Query 451326 TAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGAC 451385 |||| || || || || || || |||||| |||| | || ||||| ||||||||||| Sbjct 1675 TAATAACAGTACCTGCATACTTTAATGATTCACAGAGACAGGCAACAAAAGATGCAGGTA 1616 Query 451386 ATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCAT 451445 ||| || || |||||||| | || || || ||||| || |||||||| || |||| | Sbjct 1615 CTATAGCAGGATTAAATGTATTACGTATAATAAATGAGCCAACAGCAGCAGCAATAGCCT 1556 Query 451446 ATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTG 451505 |||| | ||| || || | | || ||| | ||| || | | |||||| | || | Sbjct 1555 ATGGGTT-GGATAAG--AAGGGACAAGGAGAGATGAATGTTCTTATCTTTGATATGGGGG 1499 Query 451506 GAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAA 451565 |||| || |||| || | ||| | || || ||||| | ||||| || ||||| | Sbjct 1498 GAGGGACCTTTGATGTCTCCTTGCTTACTATAGAGGATGGCATCTTTGAGGTCAAGGCTA 1439 Query 451566 CCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGGAATGGTTGA 451625 | || ||||| |||||||| || ||||| |||||||| | | || || | ||| Sbjct 1438 CAGCAGGAGATACACATCTAGGGGGAGAAGACTTTGATAATAGATTAGTAGATTT-TTGT 1380 Query 451626 AAACT-GATGTTCAACGAAA-ACTAAAAGTA--GATATTTCTACTAACCAAAAAGCACTT 451681 | || ||| || | |||| | || | | ||| || ||| | ||| | Sbjct 1379 ATACAAGATTTTAAGAGAAAGAATAGATCCAAGGATCCAAGTAATAATAGTAGGGCATTA 1320 Query 451682 AGACGTCTTAAAACATCAGCA-GAAAAAGCTAAAATTACACTCAGTTCAA---CACAAAC 451737 || | || ||| ||| || | ||| || | ||||| ||| | ||||| | Sbjct 1319 AGGAGACTACGTACA-CAGTGCGAGAGAGCAAAGAGGACACTAAGTAGTAGTACACAAGC 1261 Query 451738 TACTAGTATAAACATTGATAGTTTAGTTGATGGAATGGATTATGCTACTACTCTTACCC- 451796 ||||| || | |||||||||||| ||| || || ||||| || | |||| | Sbjct 1260 TACTA---TAGAGATTGATAGTTTATATGAGGGTATTGATTACTCTGTCTC-CTTATCTA 1205 Query 451797 GTGCTAAATTTGAATCAATTTGT-TCCAGTATTTTTGCACGGGTAATGAAACCTGTTGAT 451855 | |||| ||| || | | ||| | | ||||| | | | | | ||| || || Sbjct 1204 GGGCTAGATTCGAGGAATTATGTATGGATTATTTCCGTAACTCTCTT-ATACCCGTAGAA 1146 Query 451856 CAAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTG-ATGAAATTGTGCTTGTAGG 451914 ||||| || | ||| ||| || || |||| | | |||| | || || ||||| Sbjct 1145 AAAGTACTAAAAGATAGTAATAT-AGATAAGAGGAGTGTACATGAGGTAGTACTGGTAGG 1087 Query 451915 AGGTTCTACACGAATTCCTAAAATTCAAGATATGTT----GTCTTCTTATTTTGGAGGAA 451970 ||| ||| |||| || || || ||| | | | | ||||| | || | Sbjct 1086 AGGGAGCACAAGAATACCCAAGATACAACAACTTATACAAGAATTCTTTAAT----GGTA 1031 Query 451971 AACAACTATGTAAGAGCG-TAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAA 452029 | ||| ||||| || | | ||||||||||| |||||||| |||||||| || || || Sbjct 1030 AGGAACCATGTA-GATCTATTAATCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTACAG 972 Query 452030 GCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTA 452089 |||||||| |||| ||| | || | | || || |||| | | ||| ||||||| Sbjct 971 GCAGCTATACTAAAAGGAGTAAATAGTACACAAGTACAAGATTTATTATTATTAGATGTT 912 Query 452090 ACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGA 452149 | ||| |||| | ||| | || ||||| || ||| | ||||| || ||||| | || Sbjct 911 GCTCCTTTATCATTAGGACTAGAGACAGCAGGAGGAGTAATGACAAAATTAAT--AGAGA 854 Query 452150 GGA--ACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACA---GCAAGTGATAACC 452204 ||| || | || || ||||| |||| ||| | ||| ||| ||||| | Sbjct 853 GGAATACAACAATACCAACAAAAAAATCGCAAATATTCACAACATATGCA---GATAATC 797 Query 452205 AACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATA 452264 | ||||||||| |||||| |||| ||| || || | |||||||| ||||||||| Sbjct 796 AGCCAGGTGTACTTATTCAGGTGTATGAGGGGGAGAGGGCAATGACTAAGGATAATAATT 737 Query 452265 AACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTG 452324 ||||||| | || ||| || |||||| || || ||| || ||||| | Sbjct 736 TACTAGGAAAGTTCCATCTAGATGGTATACCTCCTGCACCTAGAGGAGTACCACAAATAG 677 Query 452325 AAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTG---CAGTTGAAAAAT 452381 | |||||| |||| | ||||| ||||||||| | ||||| | || ||| ||||||| Sbjct 676 AGGTTACCTTTGATATAGATGCCAATGGTATTATGAATGTTACTGCTACAG-AGAAAAAT 618 Query 452382 CATCTGGAAAATCAGAAA--AAATTACAATTACTAATGATAA----AAACCGTTTATCTA 452435 | |||||| || || |||| || |||||||||||||| | || ||| | Sbjct 617 --ACAGGAAAA--AGTAACCAAATAACTATTACTAATGATAAGGGTAGAC---TTA-GTC 566 Query 452436 AAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGAACAAG 452495 | | || || || | |||||| | ||| |||||||| | |||| || |||| | | Sbjct 565 AGGGGGAAATAGATAGAATGGTTGCTGAGGCAGAAAAGTATAAGGCAGAGGATG---AGG 509 Query 452496 TTAGAAAACA---TGTTGAAGCTAAAAACAAACTAGAAGGATATTGTTAT 452542 || ||||| | || || ||||| || ||||| ||||||||| Sbjct 508 CTAATAAACAAAGGATAGAGGCAAAAAATAATCTAGAGAATTATTGTTAT 459 >seq655 Length=63591 Score = 221 bits (244), Expect = 5e-52 Identities = 445/654 (68%), Gaps = 17/654 (3%) Strand=Plus/Plus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 ||||| |||||| | || || || | || || || || || || | | ||| |||| Sbjct 60744 ATTGGTATTGATTTGGGTACGACATACTCGTGCGTTGGGGTGTATAGACAGGGACGTGTA 60803 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGAT 451036 || || ||| | ||||| |||||| || | ||||||| | ||| |||| | ||| Sbjct 60804 GATATAATACCTAATGATCAAGGAAATCGTATTACTCCTAGTTATGTATCTTTTGCTGAT 60863 Query 451037 TCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATG--GTAAATTCAAATGCCAAAAAC 451093 || |||| | |||| |||| || || | | | | | |||| || | | ||| Sbjct 60864 GATGAGAGACGTATAGGAGAAGCAGCAAAGAACGAGGCAGCAAAT---AACCCAACAAAT 60920 Query 451094 ACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAA 451153 ||| ||| ||||| |||||| |||| || | | | | |||| | ||||||| | Sbjct 60921 ACAATATTTGATGTAAAACGTCTAATAGGGAGAAGATTTAATGAGAAAGAAGTACAAAGA 60980 Query 451154 GAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTA 451213 || ||| |||| || ||||| || | | ||| || | || || || ||||| | || Sbjct 60981 GATAAAGAATTACTTCCTTATAATATTATTAATAAAGATGGTAAACCTTATATACGTGTT 61040 Query 451214 AATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTAC- 451272 | ||| || || ||||| || || ||||| ||| | || ||||||| |||| Sbjct 61041 ATGGTTAAGGGACAACCTAAAGAATTAGCACCTGAGGAAGTATCTGCTATGGT-CTTAGG 61099 Query 451273 TAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTAC 451332 ||||||||| ||| ||||| | ||| ||||| ||||| |||| || |||| Sbjct 61100 TAAAATGAAGGAAGTTGCAGAGAATTATCTTGGTAAAGAAGTTAAGAATGCTGTTGTTAC 61159 Query 451333 TGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGC 451392 |||||| || || || |||||||||||| | |||||||| ||||| ||||| |||||| Sbjct 61160 TGTTCCTGCATACTTTAATGATGCACAAAGACAAGCAACAAAAGACGCAGGTGCTATTGC 61219 Query 451393 TGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452 ||| | |||||| |||| ||||||||||||||||| || |||||| | || || || || Sbjct 61220 AGGTCTTAATGTTATTCGTATTATTAATGAACCTACTGCTGCTGCTATTGCTTACGGTCT 61279 Query 451453 AGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAAC 451512 | || |||| ||| ||||| | ||| | || | ||| ||||||| || || Sbjct 61280 TG----ATAAAAA-----AGACGAAAAGACTATCCTTGTCTACGATCTTGGTGGTGGTAC 61330 Query 451513 TCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566 |||| || || ||| ||||| | || ||||| ||||| | ||||| Sbjct 61331 CTTTGATGTATCCGTCCTTGTTATTGACAACGGTGTATTCGAAGTCCATGCAAC 61384 Score = 91.5 bits (100), Expect = 6e-13 Identities = 212/315 (67%), Gaps = 31/315 (10%) Strand=Plus/Plus Query 451842 TGAAACCTGTTGATCAAGTATTACATGATTCTAAAATTAGTAAAGATA----AAATTGAT 451897 ||||||||||| | ||||| | | ||| | | | | |||||| | | || || Sbjct 61996 TGAAACCTGTTAAACAAGTTCTTGAAGATGC--AGACT--TAAAGAAATCACAGATAGAC 62051 Query 451898 GAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTT----GTC 451953 |||||||| ||||| || ||||| ||||| |||||||| || ||| | | | | Sbjct 62052 GAAATTGTTCTTGTTGGTGGTTCAACACGTATTCCTAAGATCCAACAACTTATTAAGGAA 62111 Query 451954 TTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAA---ATCCTGATGAAGCTGTTGC 452010 ||||| | || ||| | | ||| || | || ||||||||||||| ||||| Sbjct 62112 TTCTT----TAACGGTAAAGAGCC---TAACAGAGGAATTAATCCTGATGAAGCCGTTGC 62164 Query 452011 ATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGA 452070 |||||||| || || ||||||| ||| || |||| ||| | | | | ||| Sbjct 62165 TTATGGTGCAGCTGTACAAGCAGGTATCTTATCAGG---AGAAGGTACACA------AGA 62215 Query 452071 TATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGAT 452130 ||| | ||| | ||||| || ||||| ||||||| |||| |||||||| || | || Sbjct 62216 TATGGTCTTACTTGATGTTACTCCTCTTACTCTTGGTATTGAGACAGCTGGAGGTGTCAT 62275 Query 452131 GACTAATTTAATTAA 452145 | |||| | ||||| Sbjct 62276 GGCTAAAGTTATTAA 62290 >seq2966 Length=1119 Score = 123 bits (136), Expect = 1e-22 Identities = 110/135 (81%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 499665 GAAAGACCTCAAGATGTGTTCATGCGAGT-AGCATCTCTTGTACATTGTGGTGATTTACA 499723 |||||||| ||| || || | ||| |||| ||| | | | ||||||||||||||||||| Sbjct 812 GAAAGACCACAACATATGCTTATGAGAGTTAGC-TGTGGTATACATTGTGGTGATTTACA 870 Query 499724 AAAAACAATAGATTCATATAATTTAATGTCaaaaaaaTATTTTACTCATGCTAGTCCTAC 499783 ||||||||| | | ||| | |||||| |||||||||||||| ||||| | |||||| Sbjct 871 AAAAACAATTAAATGTTATGAATTAATGAGTAAAAAATATTTTACGCATGCAACTCCTAC 930 Query 499784 ATTATTTAATGCAGG 499798 ||||||||||||||| Sbjct 931 ATTATTTAATGCAGG 945 >seq2330 Length=2393 Score = 111 bits (122), Expect = 6e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || ||| | ||||| ||| |||| Sbjct 11 ATGCAGATCTTCGTGAAGACTCTGACTGGAAAGACCATCACTTTGGATGTCGAACCATCA 70 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | | || || ||||| |||||||| || |||||||||||||| Sbjct 71 GATACGATCGAGAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGATCAG 130 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | |||||| | || || || || || ||||| || || | | ||||| || Sbjct 131 CAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGGCAGGACGCTTTCCGATTACAAC 190 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || ||||| || || Sbjct 191 ATTCAGAAGGAGTCTACCCTTCATTTGGT 219 Score = 111 bits (122), Expect = 6e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || ||| | |||||||| |||| Sbjct 239 ATGCAGATCTTCGTGAAGACTCTGACTGGAAAGACCATCACTTTGGATGTTGAGCCATCA 298 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | | || || ||||| |||||||| || |||||||||||||| Sbjct 299 GATACTATCGAGAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGATCAG 358 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | |||||| | || || || || || ||||| || || | | ||||| || Sbjct 359 CAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGGCAGGACGCTTTCCGATTACAAC 418 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || ||||| || || Sbjct 419 ATTCAGAAGGAGTCTACCCTTCATTTGGT 447 >seq1850 Length=3576 Score = 84.2 bits (92), Expect = 9e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 412262 TAATAAAAGTTATACTTACACCCTTTTTTCCAAAACGACCACTTCTACCAATTCTATGTA 412321 ||| |||| | || || ||| ||| | ||||| || ||||| | ||||||||||| | Sbjct 3403 TAACAAAATTAATTGCTATACCTTTTCTACCAAATCGTCCACTACGTCCAATTCTATGGA 3344 Query 412322 TAAAAGTTTCATGATTTTTAGGTAAATCATAATTTATAACTAATTTAACCTCAGGAATAT 412381 || || |||| | | | |||||| ||||||||| || ||||| || | | | || Sbjct 3343 TATAATTTTCTTTACTAGTAGGTATATCATAATTAATTACTAAGGATACTTGTTGTACAT 3284 Query 412382 CTATCCCCCGTGCTAATAAATCAGTTGTTAATAA 412415 |||| || | ||||||||||| || |||| ||| Sbjct 3283 CTATACCTCTAGCTAATAAATCTGTAGTTATTAA 3250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975628181288912