Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq648 423 1e-112 seq655 248 7e-60 seq430 93.3 3e-13 >seq648 Length=64315 Score = 423 bits (468), Expect = 1e-112 Identities = 1015/1516 (67%), Gaps = 32/1516 (2%) Strand=Plus/Plus Query 517210 ATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATT 517269 || |||||||||||| || | || ||| ||| ||| || | ||||| ||||| Sbjct 582 ATCATTAGTAATAGTTATTTGGTTACTTTTTCCTGTATTTTTCTCTGTAGCAGTAACATT 641 Query 517270 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 517329 | ||||||||||||||| | |||||| || || || ||||| || || ||||| | || Sbjct 642 CATAATACCATTGGCATCTATATCAAAGGTAACCTCTATTTGTGGTACTCCTCTAGGTGC 701 Query 517330 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 517389 ||| || || || || | || || |||| || ||||||||| ||||| | | | Sbjct 702 AGGAGGTATACCATCTAGATGGAACTTTCCTAGTAAATTATTATCCTTAGTCATTGCCCT 761 Query 517390 TTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATAC 517449 || ||||| | | || ||| || | | |||||||||| ||| ||||| |||| Sbjct 762 CTCCCCCTCATACACCTGAATAAGTACACCTGGCTGATTATCTGCATATGTTGTGAATAT 821 Query 517450 TCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACC 517509 | |||||||| || |||||||| || || || || | || ||||| | || || Sbjct 822 TTGCGATTTTTTTGTTGGTATTGTTGTATTCCTCTCTATTAATTTTGTCATTACTCCTCC 881 Query 517510 TGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTT 517569 |||||| |||| || | || | ||||| ||||| | || | | || ||| | || Sbjct 882 TGCTGTCTCTAGTCCTAATGATAAAGGAGCAACATCTAATAATAATAAATCTTGTACTTG 941 Query 517570 TTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 517629 | | | || || || |||||||| || | ||| |||||||| |||||||| || Sbjct 942 TGTACTATTTACTCCTTTTAGTATAGCTGCCTGTACAGCTGCACCATAAGCAACAGCCTC 1001 Query 517630 ATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT 517689 ||||||||||| || | | | ||| |||||||| || || | | | ||||||| Sbjct 1002 ATCAGGATTAATAGATCTACATGGTTCCTTACCATTAAAGAATTCTTGTATAAGTTGTTG 1061 Query 517690 TACCTTAGGAATACGAGATGAT-CCTCCAACTAATACAATTTCATGCACCTGTGATTTAT 517748 || ||| || || | | || | ||||| || | ||| | ||||| || |||| Sbjct 1062 TATCTTGGGTATTCTTG-TGCTCCCTCCTACCAGTACTACCTCATGTACACTCCTCTTAT 1120 Query 517749 CCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTG 517808 | | || ||| || |||||||| |||||| |||| | || | || Sbjct 1121 CTATATTACTATCTTTTAGTACTTTTTCTACGGGTATAAGAGAGTTACGGAAATAATCCA 1180 Query 517809 AACAAAGTTCTTCGAATTTAGCTCTAG-TAAGAGTGACATTATAATCAATTCCTTCGAAC 517867 ||| | ||| |||||| |||| |||| |||| | |||| |||||||| || || | Sbjct 1181 TACATAATTCCTCGAATCTAGCCCTAGATAAG-GAGACAGAGTAATCAATACCCTCATAT 1239 Query 517868 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 517927 ||| ||||| || || |||| ||| || | | ||||| | || || | || Sbjct 1240 AAACTATCAATCTCTATAGTAGCTTGTGTACTACTACTTAGTGTCCTCTTTGCTCTCTCG 1299 Query 517928 CATGCTGTCCTTAGTCTTCGTAA-GGCTTTTGCTGATTGATTCAAATCT--GTTTTATAT 517984 || ||| | |||||| | ||| | | | | ||| || | || | | ||| Sbjct 1300 CACTGTGTACGTAGTCTCCTTAATGCCCTACTATTATTACTTGGATCCTTGGATCTATTC 1359 Query 517985 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 518044 |||||||| ||||||| | ||| | ||| | | ||||||||| ||||| || || Sbjct 1360 TTTCTCTTAAAATCTTGTATACAAAAATCTACTAATCTATTATCAAAGTCTTCTCCCCCT 1419 Query 518045 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG--ACAAAA 518102 | | |||| ||||| ||||| | || | || | ||||| || | || | || Sbjct 1420 AGATGTGTATCTCCTGCTGTAGCCTTGACCTCAAAGATGCCATCCTCTATAGTAAGCAAG 1479 Query 518103 GAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT--TTGTC 518160 ||| |||||| ||| || || ||||||||||| ||||| |||||||| ||| ||||| Sbjct 1480 GAG--ACATCAAAGGTCCCTCCCCCCATATCAAAGATAAGAACATTCATCTCTCCTTGTC 1537 Query 518161 TTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAA 518220 || ||||| | ||||| || | || || || ||||| ||||| || || | || Sbjct 1538 --CCTTCTTATCCAACCCATAGGCTATTGCTGCTGCTGTTGGCTCATTTATTATACGTAA 1595 Query 518221 AACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAA 518280 ||||| | || || || | ||||||||||| || || ||||| |||||||| ||||| Sbjct 1596 TACATTTAATCCTGCTATAGTACCTGCATCTTTTGTTGCCTGTCTCTGTGAATCATTAAA 1655 Query 518281 ATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCT-TGCCG 518339 |||||||| || || || || || || ||| ||||||||| ||| || | | || Sbjct 1656 GTATGCAGGTACTGTTATTACTGCTTCTTTTATTTCTTTACCTATA-AATTGTTCAGCAA 1714 Query 518340 TTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--GGAATATTGCTTGGA 518397 | | ||||| || |||| | ||| | || | || || | ||| || | | Sbjct 1715 TCTCCTTCATCTTCATTAATACCATGGCACTTATCTCCTCAGGATGAAATGTTTTCTTTA 1774 Query 518398 TTCATTTTGATATGATACTTCAAAATATGGTTTA------TTACCAACATTAATAACTTT 518451 ||| ||| || |||||| | |||||||| || | |||| || | Sbjct 1775 TTC--CTTGGTAATTTACTTCTATTAATGGTTTACCTCCTGGTCCTCCCTTAACAA---T 1829 Query 518452 AAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAA 518511 ||||||||| | ||||| |||| || ||| | | || | | | | ||||| || || Sbjct 1830 AAATGGCCAATGCTTCATGTCTGCCTGTACAGCTGGATCGTCATACTTCCTACCTATCAA 1889 Query 518512 TCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATC 518571 | |||||||||||| | ||||| |||||| |||| | |||| || |||||||| Sbjct 1890 CCTTTTTGCATCAAATACTGTATTCTCTGGATTCCTTGCTACCTGATTCTTTGCTGCATC 1949 Query 518572 TCCAATCAGATGT-TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 518630 || | | || | ||||| || ||||||| ||||| || || ||||| |||||||||| Sbjct 1950 CCCTA-CTAATCTCTCTGTATCCGTAAATGCTACATAAGAAGGGGTTGTACGATTACCTT 2008 Query 518631 GATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTG 518690 ||||||| || || || || || | |||| | ||||||||||||||| | | |||| Sbjct 2009 GATCATTTGCTATTATCTCTACACCATCATTCTTCCATACACCTACACATGAATATGTTG 2068 Query 518691 TTCCTAAATCAATACC 518706 | || ||||| ||||| Sbjct 2069 TACCCAAATCTATACC 2084 >seq655 Length=63591 Score = 248 bits (274), Expect = 7e-60 Identities = 429/611 (70%), Gaps = 22/611 (4%) Strand=Plus/Minus Query 518107 TACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 518166 ||||||| ||| |||||||| | ||| | | ||| | | || |||| ||||| | Sbjct 61340 TACATCAAAGGTACCACCACCAAGATCGTAGACAAGGATAGTCTTTTC---GTCTT---T 61287 Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 |||||||||||| || |||| |||||||||||| |||||||||||||| | | |||||| Sbjct 61286 TTTATCAAGACCGTAAGCAATAGCAGCAGCAGTAGGTTCATTAATAATACGAATAACATT 61227 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 |||||| ||||| ||||| ||||| || ||||||||||||| ||| ||||| ||||| Sbjct 61226 AAGACCTGCAATAGCACCTGCGTCTTTTGTTGCTTGTCTTTGTGCATCATTAAAGTATGC 61167 Query 518287 AGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTT 518346 ||||||||||| ||| |||| | ||||||||||||| |||| ||| || || Sbjct 61166 AGGAACAGTAACAACAGCATTCTTAACTTCTTTACCAAGATAATTCTCTGCAACTTCCTT 61107 Query 518347 CATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGAT--TCATTT 518404 |||||||| ||| | ||| | || | || || || | ||| || | | || || Sbjct 61106 CATTTTACCTAAGACCATAGCAGATACTTCCTCAGGTGCTAATTCTTTAGGTTGTCCCTT 61047 Query 518405 TGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTAT 518464 || | || | | ||| |||||| | | |||||||| ||| | || |||| Sbjct 61046 AACCATAACACGT--ATATAAGGTTTACCATCTTTATTAATAATATTATAAGG-AAGTAA 60990 Query 518465 TTC-ATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATC 518523 ||| ||||| ||| || || |||||||| ||| || |||| |||||| |||| Sbjct 60989 TTCTTTATCTCTTTGTACTTCTTTCTCATTAAATCTTCTCCCTATTAGACGTTTTACATC 60930 Query 518524 AAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATG 518583 ||| || ||||| ||||| ||| |||| || | | || ||||| ||||| || | | Sbjct 60929 AAATATTGTATTTGTTGGGTTATTTGCTGCCTCGTTCTTTGCTGCTTCTCCTAT---ACG 60873 Query 518584 T-TCT-GTC-TCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGC 518640 | ||| || || | ||| || ||||| ||||| | ||||| ||||||||||| | Sbjct 60872 TCTCTCATCATCAGCAAAAGATACATAACTAGGAGTAATACGATTTCCTTGATCATTAGG 60813 Query 518641 AATAATTTCAACTTTACCATTTTGCCATACA--CCTACACAACTAAAAGTTGTTCCTAAA 518698 || || || || || | | | ||||| || || || | || || || ||| Sbjct 60812 TATTATATCTACACGTCCCTGT--CTATACACCCCAACGCACGAGTATGTCGTACCCAAA 60755 Query 518699 TCAATACCAAT 518709 ||||||||||| Sbjct 60754 TCAATACCAAT 60744 Score = 125 bits (138), Expect = 5e-23 Identities = 211/302 (70%), Gaps = 15/302 (5%) Strand=Plus/Minus Query 517486 AATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATC 517545 ||||| || | ||| | ||| || ||||| || | |||||||| ||||||||| ||||| Sbjct 62288 AATAACTTTAGCCATGACACCTCCAGCTGTCTCAATACCAAGAGTAAGAGGAGTAACATC 62229 Query 517546 AACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAAT 517605 || || ||| |||| ||| ||| | | | |||| || ||||||| | Sbjct 62228 AAGTAAGACCATATCTTGTGTACCTTCTCCTGAT--------AAGA-TACCTGCTTGTAC 62178 Query 517606 AGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTT--TCATTTA-GTTTTTTACC 517662 ||| |||||||| ||||| |||||||||||||||| || || ||| | | |||||| Sbjct 62177 AGCTGCACCATAAGCAACGGCTTCATCAGGATTAA---TTCCTCTGTTAGGCTCTTTACC 62121 Query 517663 ATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 517722 || || || | || ||||||| | |||||||||||| | ||| || ||||| | Sbjct 62120 GTTAAAGAATTCCTTAATAAGTTGTTGGATCTTAGGAATACGTGTTGAACCACCAACAAG 62061 Query 517723 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 517782 |||||||| | | ||||||||| | | | || ||| | ||||| || ||| || Sbjct 62060 AACAATTTCGTCTATCTGTGATTTCTTTAAGTCTGCATCTTCAAGAACTTGTTTAACAGG 62001 Query 517783 TT 517784 || Sbjct 62000 TT 61999 Score = 95.1 bits (104), Expect = 9e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 322243 ACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGC 322302 |||||| |||| ||| || ||||| ||||||||||| || || ||||| | ||| || Sbjct 61277 ACCGTAAGCAATAGCAGCAGCAGTAGGTTCATTAATAATACGAATAACATTAAGACCTGC 61218 Query 322303 AATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGT 322362 ||| | | | || ||||||||||| ||||| |||||||| ||||| || ||||| Sbjct 61217 AATAGCACCTGCGTCTTTTGTTGCTTGTCTTTGTGCATCATTAAAGTATGCAGGAACAGT 61158 Query 322363 AATAACTGCTTTATTAA 322379 || ||| || || |||| Sbjct 61157 AACAACAGCATTCTTAA 61141 >seq430 Length=34874 Score = 93.3 bits (102), Expect = 3e-13 Identities = 76/91 (84%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 870794 AAAATTATTG-TCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTT 870852 |||| ||||| | |||| ||| || |||||| |||| ||||||||||| | || ||| | Sbjct 30039 AAAAGTATTGGTAGATTTTTCATCACCAAATGTTGCAAAAGAAATGCACGTCGGTCATCT 29980 Query 870853 AAGATCAACTATTATTGGTGAATCTATTTGT 870883 | |||||||||||||||| |||||||||||| Sbjct 29979 ACGATCAACTATTATTGGAGAATCTATTTGT 29949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780645542580184