Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq648 266 4e-66 seq655 158 2e-33 >seq648 Length=64315 Score = 266 bits (294), Expect = 4e-66 Identities = 1057/1644 (64%), Gaps = 22/1644 (1%) Strand=Plus/Plus Query 6517 ATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGA-CCTTTTTCGCGTACTTTTCATCTT 6575 |||||| || || || ||| ||| || ||||| | ||||| | || | |||| | Sbjct 459 ATAACAATAATTCTCTAGATTATTTTTTGCCTCTATCCTTTGTTTATTAGCCT-CATCCT 517 Query 6576 CATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA-TAA-TCT 6633 | | ||||||||||| || || ||||| | || || || | | || ||| ||| Sbjct 518 CTGCCTTATACTTTTCTGCCTCAGCAACCATTCTATCTATTTCCCCCT--GACTAAGTCT 575 Query 6634 CCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACT 6693 ||||||||||| ||||| || || | | ||| || | || ||| |||| | Sbjct 576 ACCCTTATCATTAGTAATAGTTATTTGGTTACTTTTTCCTGTATTTTTCTCTGTAGCAGT 635 Query 6694 TACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCT 6753 ||||||| ||||||||| ||||| | ||| || | || | ||||||||| || || Sbjct 636 AACATTCATAATACCATTGGCATCTATATCAAAGGTAACCTCTATTTGTGGTACTCCTCT 695 Query 6754 CGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTT 6813 ||||| | || ||||| || || || | || |||||| | |||||| | | | | Sbjct 696 AGGTGCAGGAGGTATACCATCTAGATGGAACTTTCCTAGTAAATTATTATCCTTAGTCAT 755 Query 6814 CTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGA 6873 | || || ||||| || | ||| || | || ||||||||| |||| Sbjct 756 TGCCCTCTCCCCCTCATACACCTGAATAAGTACACCTGGCTGATTATCTGCATATGTTGT 815 Query 6874 GAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAAT 6933 ||| ||||| ||| || | ||| || || ||||| ||| || | ||||| | Sbjct 816 GAATATTTGCGATTTTTTTGTTGGTATTGTTGTATTCCTCTCTATTAATTTTGTCATTAC 875 Query 6934 ACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTG 6993 || || || || ||||| | || | ||| | || || || | ||| | ||||| Sbjct 876 TCCTCCTGCTGTCTCTAGTCCTAATGATAAAGGAGCAACATCTAATAATAATAAATCTTG 935 Query 6994 AACAGATTCGTTCCCTTCAC-CCGTTAAG-ATGGCGGCTTGGACCGTCGCCCCGTATGCG 7051 || | || | || || || || || || || || || || | || || || || Sbjct 936 TACTTGT--GTACTATTTACTCCTTTTAGTATAGCTGCCTGTACAGCTGCACCATAAGCA 993 Query 7052 ACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAAC 7111 || |||||||| || ||||| | | || |||| ||||| ||||| | || || Sbjct 994 ACAGCCTCATCAGGATTAATAGATCTACATGGTTCCTTACCATTAAAGAATTCTTGTATA 1053 Query 7112 ATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTC 7171 | |||||| || || || |||| ||| || || |||| || | |||| || || Sbjct 1054 AGTTGTTGTATCTTGGGTATTCTTGTGCTCCCTCCTACCAGTACTACCTCATGTACACTC 1113 Query 7172 GATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAAC 7231 ||||| || || ||| ||| |||||| || ||| | | | |||||||| Sbjct 1114 CTCTTATCTATATTACTATCTTTTAGTACTTTTTCTACGGGTATAAGAGAGTTACGGAAA 1173 Query 7232 AAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCG 7291 | |||||||| | |||||| || | || | | | ||| | || |||||| || Sbjct 1174 TAATCCATACATAATTCCTCGAATCTAGCCCTAGATAAGGAGACAGAGTAATCAATACCC 1233 Query 7292 TCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCG 7351 || ||||| |||||| || || || | ||||| | | || || | |||||| Sbjct 1234 TCATATAAACTATCAATCTCTATAGTAGCTTGTGTACTACTACTTAGTGTCCTCTTTGCT 1293 Query 7352 CGCTCACACGCCGTTCGTAAACGACGAAGGGC---ACGCGGGTTACC-GGAAATATCTTT 7407 | ||| ||| || |||| | | | || || |||| ||| | | Sbjct 1294 CTCTCGCACTGTGTACGTAGTCTCCTTAATGCCCTACTATTATTACTTGGATCCTTGGAT 1353 Query 7408 CTTATGTTTACGTTTAAACTCTTC-AGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTT 7466 || | ||| | ||||| |||| | | || || | | ||| ||| || |||| Sbjct 1354 CTATTCTTT-CTCTTAAAATCTTGTATACAAAAATCTACTAA-TCTATTATCAAAGTCTT 1411 Query 7467 CACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGT 7526 | || || | |||||||| || || || || ||||| |||||||| || | || || Sbjct 1412 CTCCCCCTAGATGTGTATCTCCTGCTGTAGCCTTGACCTCAAAGATGCCATCCTCTATAG 1471 Query 7527 TTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT 7586 | | ||| || |||||||| || || || |||| ||||| || || || ||| | || Sbjct 1472 TAAGCAAGGAGACATCAAAGGTCCCTCCCCCCATATCAAAGATAAGAACATTCATCTCTC 1531 Query 7587 CGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC 7646 | | | |||||||| | || || || || || || || ||||| ||||| || |||| Sbjct 1532 CTTGTCCCTTCTTATCCAACCCATAGGCTATTGCTGCTGCTGTTGGCTCATTTATTATAC 1591 Query 7647 G-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCG 7705 | || ||| || | || || ||||| | |||||||| || || |||| || ||||| Sbjct 1592 GTAATACATTTAAT-CCTGCTATAGTACCTGCATCTTTTGTTGCCTGTCTCTGTGAATCA 1650 Query 7706 TTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCC 7765 |||||||| || || || |||| || || || | | || ||||| | | | ||| Sbjct 1651 TTAAAGTATGCAGGTACTGTTATTACTGCTTCTTTTATTTCTTTACCTATAAATTGTTCA 1710 Query 7766 GCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTC 7825 || || || ||||| || | | ||||| | ||||| |||| ||| |||| Sbjct 1711 GCAATCTCCTTCATCTTCATTAATACCATGGCACTTATCTCCTCAGGATGAAATGTTTTC 1770 Query 7826 GTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTA 7885 || || | ||| ||||| || | |||||| | | | || |||| || Sbjct 1771 TTTATTCCTTGGTAATTTACTTCTATTAATGGTTTACCTCCTGGTCCTCCCTTAACAATA 1830 Query 7886 TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGA 7945 | | ||||| ||||| || | || || | | || | |||| || || || | Sbjct 1831 AATGGCCAATGCTTCATGTCTGCCTGTACAGCTGGATCGTCATACTTCCTACCTATCAAC 1890 Query 7946 CGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCC 8005 | ||||||||||| ||||| || | || ||| | ||| || ||||| || || ||| Sbjct 1891 CTTTTTGCATCAAATACTGTATTCTCTGGATTCCTTGCTACCTGATTCTTTGCTGCATCC 1950 Query 8006 CCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCT 8065 || | | | || || |||||||| || || || || ||||| || ||||| ||| Sbjct 1951 CCTACTAATCTCTCTGTA---TCCGTAAATGCTACATAAGAAGGGGTTGTACGATTACCT 2007 Query 8066 TGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTT 8125 || || || || || || ||||| | || || | ||| || || || || ||||| ||| Sbjct 2008 TGATCATTTGCTATTATCTCTACACCATCATTCTTCCATACACCTACACATGAATATGTT 2067 Query 8126 GTTCCTAAATCAATACCGATTGCT 8149 || || ||||| ||||| | |||| Sbjct 2068 GTACCCAAATCTATACCTACTGCT 2091 >seq655 Length=63591 Score = 158 bits (174), Expect = 2e-33 Identities = 411/616 (67%), Gaps = 22/616 (4%) Strand=Plus/Minus Query 7535 GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG 7594 || |||||||| ||||||||||| || || | | || | | || | |||||||| Sbjct 61342 GATACATCAAAGGTACCACCACCAAGATCGTAGACAAGGA---TAGTCTTTTCGTCTTTT 61286 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || ||| |||||||| || ||||| || || || ||||||||||||||||||| | Sbjct 61285 TT---ATCAAGACCGTAAGCAATAGCAGCAGCAGTAGGTTCATTAATAATACGAATAACA 61229 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || ||||||| | || ||||| || ||||||| ||| | ||| |||||||| Sbjct 61228 TTAAGACCTGCAATAGCACCTGCGTCTTTTGTTGCTTGTCTTTGTGCATCATTAAAGTAT 61169 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || || || || || || || | | | |||| ||||| ||||| || || | || Sbjct 61168 GCAGGAACAGTAACAACAGCATTCTTAACTTCTTTACCAAGATAATTCTCTGCAACTTCC 61109 Query 7775 TTCATTTT-GGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACC 7833 |||||||| |||| ||||| | || | || |||| || || | ||| | || || Sbjct 61108 TTCATTTTACCTAAG-ACCATAGCAGATACTTCCTCAGGTGCTAATTCTTTAGGTTGTCC 61050 Query 7834 GTTAA-AATCA-ACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACG-- 7889 |||| || | || | || | |||||| || | |||| ||||| | Sbjct 61049 CTTAACCATAACACGTATATAA--GGTTTA---CCATCTTTATTAATAATATTATAAGGA 60995 Query 7890 ACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCT 7949 | ||| || |||| ||| || | || || ||| |||| || || ||||| | Sbjct 60994 AGTAATTCTT--TATCTCTTTGTACTTCTTTCTCATTAAATCTTCTCCCTATTAGACGTT 60937 Query 7950 TTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGA 8009 || ||||||| | ||| ||| | ||||| | |||| | |||||| || || || || | Sbjct 60936 TTACATCAAATATTGTATTTGTTGGGTTATTTGCTGCCTCGTTCTTTGCTGCTTCTCCTA 60877 Query 8010 TAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGT 8069 || | | |||| | || | ||| | || || || || | ||||| ||||| | Sbjct 60876 TACGTCTCTCATCA---TCAGCAAAAGATACATAACTAGGAGTAATACGATTTCCTTGAT 60820 Query 8070 CGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTC 8129 | || | || || ||||| || | | | | || || |||||||| || || || | Sbjct 60819 CATTAGGTATTATATCTACACGTCCCTGTCTATACACCCCAACGCACGAGTATGTCGTAC 60760 Query 8130 CTAAATCAATACCGAT 8145 | ||||||||||| || Sbjct 60759 CCAAATCAATACCAAT 60744 Score = 118 bits (130), Expect = 1e-21 Identities = 189/270 (70%), Gaps = 1/270 (0%) Strand=Plus/Minus Query 6566 TTTTC-ATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTT 6624 ||||| ||| |||||| | ||||||| || ||||| | |||| |||| || || || Sbjct 62833 TTTTCTATCCTCATCTGCAAACTTTTCTGCTTCTTGTATCATCCTTTCTATCTCATCAGG 62774 Query 6625 CGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATC 6684 | | ||| || |||||||| || || || || || ||| || || | | ||||| Sbjct 62773 AGTAAGTCTTCCTTTATCATTAGTTATTGTTATTTTCTCGCTCTTTCCTGTTCCTTTATC 62714 Query 6685 TTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGG 6744 | |||||||||||||||| ||||| || || ||||| || |||||| || ||||| Sbjct 62713 TACAGCACTTACATTCAATATACCGTTCCTGTCTACATCAAATGTTACATCTATCTGTGG 62654 Query 6745 TGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATC 6804 | ||| | ||||| | || || || ||||| ||||| | || | |||| ||||| Sbjct 62653 TACACCACGAGGTGCAGGAGGTATTCCTGTTAATTCAAACTTTCCTAATAAATGGTTATT 62594 Query 6805 CGTCGCCTTCTTACGTTCACCTTCATAGAC 6834 | | | | | ||| || |||||||| || Sbjct 62593 CTTTGTCATAGGACGCTCTCCTTCATACAC 62564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635104504833760