Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq72 120 3e-22 seq270 109 6e-19 seq1946 89.7 6e-13 >seq72 Length=10857 Score = 120 bits (132), Expect = 3e-22 Identities = 284/426 (67%), Gaps = 5/426 (1%) Strand=Plus/Minus Query 46977 TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTC 47036 || |||||||| ||||| | || || | || ||| | |||||||||||||| ||| Sbjct 649 TCAACAGTAAATTTAATAGCATCTGCAGCAGCTTGTGTCCTAAAATAATACATACCTGTC 590 Query 47037 TTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCT 47096 || | ||| |||| ||| || |||||| ||| ||| |||| |||| ||| | Sbjct 589 TTGAGTCCTCCTTGCCATGAATAAAAGTGCATAGTAGATAACTTAGCATAAGAAGGATTA 530 Query 47097 GAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATA 47156 ||||| ||||| | |||||| |||||| || ||| | ||||| |||||| Sbjct 529 ATCATATGTATATTCATAGATTGGGACTGATCTATGTATGGTGCCCTATCTATAGCCATA 470 Query 47157 TCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCT 47216 |||| || | ||||| || |||||||| |||||||| | || ||| || |||| Sbjct 469 TCTATTATTATTCTTTGCTTAATTTCCCATACAGTTTTATATAATTCTTTTATTTCTTTA 410 Query 47217 GGGAGATTA---GTATTTTGAATAGATCCTCCgttttcta-taattttgttttttaattc 47272 || | |||| ||| ||| ||| || | | ||| |||| | | ||| Sbjct 409 GGTATATTATCTATATGTTGTATACTACCATTATATGCTATTAATAATTCACGTGTCTTC 350 Query 47273 atttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAA 47332 | || ||| | | || |||| | |||| | ||||||||| || | ||| Sbjct 349 -TCTGTCCATACACCACAATCTATTAAATCTCTTAATAAATGAGGATTTACTACAAAAAA 291 Query 47333 TTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATT 47392 ||| ||| || ||| | ||| ||||||||||||||||||||| || | | |||||| Sbjct 290 TTCACCACTTAATACACGACGTAAATATATATTACTTGTATATGGCTCAAATGCTTCATT 231 Query 47393 ATTTCC 47398 |||||| Sbjct 230 ATTTCC 225 >seq270 Length=46145 Score = 109 bits (120), Expect = 6e-19 Identities = 134/179 (75%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 18640 TTCT-CTTCATTAGAATTCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAA 18698 |||| ||| |||| | ||| ||||| ||||| || || |||||||| | ||||| Sbjct 45894 TTCTGCTTTATTAATAACCATAACTCCTGCCTTTTGGTAATCCCCAACTCTTCTCTCAAA 45953 Query 18699 GAAATTAGTTTTTCCCTCTAATGATATACAT-TCCATAAAATCAAATGGATTTTTTACAT 18757 |||||| |||||||| | ||| || || ||| |||||||||||||| |||||| |||||| Sbjct 45954 GAAATTTGTTTTTCCTTGTAAAGAAAT-CATATCCATAAAATCAAAAGGATTTCTTACAT 46012 Query 18758 TATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATAT 18816 || |||| |||| |||||| | || || | ||| || ||||||| |||||| Sbjct 46013 TAAATATCTTTTCTCCTCCTAAACAAACTAATAAACGATCAGCAACAAATTCTATATAT 46071 >seq1946 Length=2437 Score = 89.7 bits (98), Expect = 6e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 48203 TACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAG 48262 |||||| |||||||| ||| |||||||| ||||| ||||| ||| || | || | Sbjct 1457 TACTCTTTGCATAAATAGATCAGGTATCCATAGAGCAGGAAATAGATCTCTTGCCCTCAT 1516 Query 48263 TTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGG 48322 ||||| |||||| ||| || | | || | || || | |||||| ||||||||||| Sbjct 1517 CTCTTCTTTGCCATGATTTTTTCTTATATCTAAGAATTCAAATATATCTGCATGCCATGG 1576 Query 48323 TTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATA 48376 ||||| ||||| || | ||| || ||| ||||||||||||| ||| Sbjct 1577 TTCTAGATATACAGCAAGACTTCCTTTTCTTTTCCCTCCTCCTTGATCTACATA 1630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562083758052960